Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1540 ATGGCTGCTCCTCCTGTTAACCCTTTGCCGGTAGCGTACCAGGCATGGAAGAGTGCGGCAGTACCCGACTGGTTGAACAAAGGAGACAACGCATGGCAAATGATATCAGCAACCTTGGTGGGAATACAGAGTATGCCGGGGCTTGTTATCCTGTACGGTAGCATCGTGAAGAAGAAATGGGCTGTGAACTCCGCTTTCATGGCTCTATACGCATTCGCCGCGGTTATTATCTGTTGGATTACTTGGGCTTATAATATGTCCTTCGGGAAAAAGCTGTTACCTTTCTGGGGAAAAGCTAGGCCCGCTTTGGATCAGAAGTTTCTCAACAAACAGGCGGCGCTGCCGGCCACACCGCATTTCTTTGGTAACGGTAGCCCGGAGACGCCCGAGATTGAGCCCTTTTATCCCATGGCCACTATGGTGTGGTTTCAGTGCGTTTTCGCGGCCATCGCGGTGGTTATATTGGCCGGATCAGTCTTGGGCAGGATGAATTTCAAGGCGTGGATGATGTTTGTGCCGCTGTGGCTCACTTTTTCTTACACGGTTGGTGCCTTCAGCTTGTGGGGTGGTGGCTTCTTGTTTCACTGGGGCGTCATGGACTATTCTGGTGGCTATGTCATTCATCTTTCTTCTGGGATTGCTGGCTTCACTGCAGCTTATTGGGTGGGACCAAGATCCAAGAAGGACAGAGAAAGGTTCCCACCAAACAATGTGTTACTAACGTTGGCAGGGGCAGGACTACTTTGGCTGGGATGGGCAGGTTTTAATGGAGGAGACCCATACTCAGCTAACATAGACTCGTCGATGGCGGTGCTCAATACCAACATCTGCGCGGCCACCAGCCTGCTTGTGTGGACGTGGCTCGACGTCATTTTCTTCAAGAAACCCTCTGTTATTGGAGCCGTTCAGGGCATGATCACCGGTCTTGTTTGCATCACTCCCGGCGCTGGTCTGGTTCAAGGGTGGGCTGCCATAGTGATGGGAGTTCTATCAGGCAGTATCCCATGGGGCACCATGATGATATTAGGGAAGAGGTTCAAACTGTTTCAGATAGTGGATGATACTCTGGCTGTGTTCCACACTCATGCCGTGGCCGGCTTTCTAGGCGGCATACTCACTGGCCTATTGGCTGAGCCTCGTCTATGTGCACTCTTCCTGGCCGTCACAAACTCCAGAGGAGGCGTCTACGGAGGCTCAGGTGGCGTCCAATTCCTTAAACAAGTCGTGGGAGGGTTGTTCATCGTGGGATGGAACCTGGTGGTCACTTCAATTATTTGTCTATTCGTAAGTTTCATCATTCCACTGAGGATGTCCGAGGAGGAGTTGCTGATTGGGGATGATGCAGTTCATGGTGAGGAAGCTTATGCCTTATGGGGTGATGGAGAGAAGCTTAGCATCTACGCAGAGGAGACCACCCACCACGGAGTGGCATCAAGTGGTGCCACTCAGATGGTCTAG 1458 0.5192 MAAPPVNPLPVAYQAWKSAAVPDWLNKGDNAWQMISATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWITWAYNMSFGKKLLPFWGKARPALDQKFLNKQAALPATPHFFGNGSPETPEIEPFYPMATMVWFQCVFAAIAVVILAGSVLGRMNFKAWMMFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYSANIDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSIPWGTMMILGKRFKLFQIVDDTLAVFHTHAVAGFLGGILTGLLAEPRLCALFLAVTNSRGGVYGGSGGVQFLKQVVGGLFIVGWNLVVTSIICLFVSFIIPLRMSEEELLIGDDAVHGEEAYALWGDGEKLSIYAEETTHHGVASSGATQMV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1540 485 SUPERFAMILY Ammonium transporter 24 437 - -
Glsi13g1540 485 PRINTS Rhesus blood group protein signature 270 292 IPR002229 GO:0005886
Glsi13g1540 485 PRINTS Rhesus blood group protein signature 144 160 IPR002229 GO:0005886
Glsi13g1540 485 PRINTS Rhesus blood group protein signature 239 257 IPR002229 GO:0005886
Glsi13g1540 485 PRINTS Rhesus blood group protein signature 325 343 IPR002229 GO:0005886
Glsi13g1540 485 Pfam Ammonium Transporter Family 31 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Glsi13g1540 485 PANTHER AMMONIUM TRANSPORTER MEP2 16 464 IPR001905 GO:0008519|GO:0016020|GO:0072488
Glsi13g1540 485 NCBIfam ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Glsi13g1540 485 FunFam Ammonium transporter 12 458 - -
Glsi13g1540 485 Gene3D Ammonium transporter AmtB like domains 11 458 IPR029020 -
Glsi13g1540 485 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1540 Glsi-ChrGlsi13 32065009 32067426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1540 137 465 Inorganic Solute Cotransporters AT2G38290 72.036 2.37e-166 472