Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1529 ATGGATAAGTACGAGGCAGTGAAGGATTTGGGAGCTGGGAATTTCGGGGTGGCTAGGCTTATGAGGAACAAGGAGACCAAGGAGCTCGTCGCCATGAAATACATCGAACGTGGCCTCAAGATTGACGAGAACGTGGCTAGAGAGATTATGAACCACAGGTCCCTTCGACACCCCAATATAATTCGATTCAAGGAGGTGGTTTTGACCCCTACACATTTAGCAATAGTGATGGAGTATGCAGCAGGAGGGGAGCTATTTGAGAGGATATGCAATGCAGGCAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATCTCTGGTGTCAATTTCTGTCATACCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGCCCTGCTCCTCGCTTGAAAATTTGTGACTTTGGTTATTCCAAGTCATCTTTGCTGCATTCACGACCCAAATCAACTGTTGGGACTCCAGCTTATATAGCACCAGAGGTTCTTTCTAGGCGAGAATATGATGGCAAGTTGGCTGATGTGTGGTCATGTGGGGTGACTCTCTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGACCAGGATGACCCTAGGAATTTCAGAAAAACAATTCAGCGAATAATGGCTGTTCAATTCAAAATCCCTGATTACGTTCACATATCTCAAGATTGCAGACACCTCCTCTCTCGTATATTTGTGGCCAATCCACTGAGGAGAATTACGATTAAGGAAATTAAGATCCATCCGTGGTTTTTAAAGAATATTCCAAGGGAGCTAACTGAATCAGCTCAGGCCATCTATTACCAGAGAGACAACCCAAGCTTTACTGTTCAAAGTGTGGAGGAGATTATGAAAATTGTTGGAGAGGCAAGAAAACCACCTCCAGTATCCAGGCCTGTAAAGGGCTTTGGCTGGGACGGTGAAGAAGATGAAGAAGTAGAAGATGTGGATGGAGAAGCGGAGGAAGAGGAGGATGGAGAAGATGAATATGACAAGAGGGTCAAGGAGGTTCAAGCAAGTGGAGAATTTCAAATCAGTTAG 1068 0.4466 MDKYEAVKDLGAGNFGVARLMRNKETKELVAMKYIERGLKIDENVAREIMNHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVNFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQFKIPDYVHISQDCRHLLSRIFVANPLRRITIKEIKIHPWFLKNIPRELTESAQAIYYQRDNPSFTVQSVEEIMKIVGEARKPPPVSRPVKGFGWDGEEDEEVEDVDGEAEEEEDGEDEYDKRVKEVQASGEFQIS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1529 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Glsi13g1529 355 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Glsi13g1529 355 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Glsi13g1529 355 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1529 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Glsi13g1529 355 MobiDBLite consensus disorder prediction 316 338 - -
Glsi13g1529 355 PANTHER SERINE/THREONINE KINASE 3 294 - -
Glsi13g1529 355 MobiDBLite consensus disorder prediction 303 355 - -
Glsi13g1529 355 CDD STKc_SnRK2 3 259 - -
Glsi13g1529 355 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1529 355 SUPERFAMILY Protein kinase-like (PK-like) 2 296 IPR011009 -
Glsi13g1529 355 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1529 355 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Glsi13g1529 355 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1529 Glsi-ChrGlsi13 31973754 31976556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1529 3 282 CBL-interacting serine-threonine protein kinases AT4G24400 41.497 9.09e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Glsi13g1529 Pkinase 5.7e-70 CL0016