Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1524 ATGGGTAGATCTCCTTGTTGCGAGAAAGAGCACACAAACAAAGGAGCTTGGACCAAAGAGGAAGACGAACGCCTCATCAACTACATCAAGCTTCATGGGGAAGGCTGCTGGAGATCTCTTCCCAAAGCAGCTGGTTTGCTTCGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTATCTGAGGCCTGATCTCAAGAGAGGAAACTTCACTGATGAAGAAGATGAGCTTATCATTAACCTCCATAGCTTACTTGGAAACAAATGGTCTCTAATAGCTGCGAGGTTACCGGGAAGAACCGATAATGAGATCAAGAACTACTGGAACACCCATATCAAACGCAAACTCTATAGCCGTGGAATCGACCCTCAAACGCATCAACAACTGAACGGCGCCGCTACCTTCGCCGTCACCACCACAGATGCTGCCCCAGTCGTCACCACAAGCAGCAAAAGAAGCAACAACGTCGATAGCAGCAGTAGCGTCAGTAGCAGCAATAACAACAATAATGGCAATTTTCAGTTAGTAACTAGTAGTGCCTATGCCAATACAAAGATTGTTGGAATTGATGCAGGTGGTGAAGATTCAAATAGCAGCAGCGGCGTTACCACTGAGGAAGCTGCCTATTCTCAACTCAACTTAGAGCTGTCCATAGGCCTTCCCTCTGATAAGCCCCATGTTTCTTCTACGAACCCAGACAAGTTAAAACCACAACCCCAAGAGCAGCAACAACAACAGGTGTTGTACAAGTGGTATGGGAACTTTAGTGGTCAAGGTGTGTGCTTGTGTTACAGTCTAGGGTTTCAAAGTAATCAACCATGTAGCTGCAAAGCCATGGATGCTACTGCTACACTTACTGAAACAGGGACCCACAGTCTCTATAGATTTCATAGACCCATGAATATTTAG 909 0.4576 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHQQLNGAATFAVTTTDAAPVVTTSSKRSNNVDSSSSVSSSNNNNNGNFQLVTSSAYANTKIVGIDAGGEDSNSSSGVTTEEAAYSQLNLELSIGLPSDKPHVSSTNPDKLKPQPQEQQQQQVLYKWYGNFSGQGVCLCYSLGFQSNQPCSCKAMDATATLTETGTHSLYRFHRPMNI 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1524 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi13g1524 302 CDD SANT 69 112 IPR001005 -
Glsi13g1524 302 SMART sant 13 63 IPR001005 -
Glsi13g1524 302 SMART sant 66 114 IPR001005 -
Glsi13g1524 302 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 227 - -
Glsi13g1524 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi13g1524 302 CDD SANT 16 61 IPR001005 -
Glsi13g1524 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi13g1524 302 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Glsi13g1524 302 FunFam MYB-related transcription factor 13 66 - -
Glsi13g1524 302 MobiDBLite consensus disorder prediction 146 170 - -
Glsi13g1524 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi13g1524 302 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi13g1524 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi13g1524 302 Gene3D - 14 66 - -
Glsi13g1524 302 FunFam Myb transcription factor 68 137 - -
Glsi13g1524 302 Gene3D - 68 134 - -
Glsi13g1524 302 MobiDBLite consensus disorder prediction 220 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1524 Glsi-ChrGlsi13 31957907 31959178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1524 1 236 MYB Transcription Factor Family AT4G38620 57.895 9.88e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1524 Myb_DNA-binding 4.4e-15 CL0123