Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1488 ATGGGTTGCGTGCTCGGAGCGCCTACGGCTGCTGGAGGCCGCAGGACGGATTCCAGAGCTCAGCACCGTCGCCGCAGTAGCCAACAAAACTCTGTGACTGATAAAAGTAATGCTGTTGGGGTTGGAAACGAAGGGACGGCGAGGGAGAGGCAAAGAATTCGGAACAATGGCGATTTTCTCGGGAATCTCCCAGCGCCGGAACGACGGAAACCCAGTCTTGATCCTTGGGCTAAAACCCAACAGGGTTGGCCATCTTGGTTGATGGCTGTGGCTGGCGACGCAATCCGAGATTGGACTCCTCGGCGGGCCAACACGTTCGAGAAGCTTGCTAAGATTGGACAAGGGACTTATAGCAATGTATATAAAGCGAAAGACCTTCTTACTGGAAAGATAGTGGCTTTAAAGAAAGTTAGGTTTGATAACCTGGAGCCAGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTGTTTTCAGGCGGCTTGATCACCCAAATGTCTTGAAACTTGAAGGTTTGGTTACTTCAAGAATGTCCTGCAGTCTTTACTTAGTATTCGAATACATGGAACACGATCTTGCCGGGCTTGCAGCTGGCCAAGGTGTCAAGTTCACTGAGCCTCAGATCAAATGCTATATGAAGCAATTACTTTCTGGCCTTGAGCATTGCCACAGTCAAGGTGTCCTGCACCGTGATATCAAGGGTTCCAATCTACTTATTGACGATGAAGGAATCCTTAAGATAGCAGATTTTGGACTGGCAACTTTCTATGATCCTGAGCAAAAGCAGCCAATGACAAGTAGAGTTGTCACCCTTTGGTATCGCCCTCCTGAGCTTCTTCTCGGGGCTACATTCTATGGTGTTGGAATCGACCTCTGGAGCGCTGGCTGCATCTTGGGAGAGCTGATTGCTGGGAAGCCAATCATGCCTGGCCGAACAGAGGTTGAACAATTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATACTGGAAGAAATATAGACTGCCAAATGCTACACTCTTTAAGCCACAGCAGCCATATAAACGTGGCATTTTGGAAACCTTCAGGGACTTCCCACCTTCTTCTTTACCTCTAATTGAAACTCTTCTTGCAATTGATCCAGATGATCGCAGCACTGCCTTGGCTGCTCTAAATAGTGAATTTTTTACCACTGAGCCCTATGCTTGTGAACCATCAAGTTTACCAAAGTATCCTCCCAGCAAAGAATTGGATGTAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAAGCTCTAAATGGGAAAGCTAATGCAGTTGATGGTGCCAGAAGAGTCAGAGTACGTGAGCGTGGACGAGCCATTCCAGCCCCAGAAGCCAATGCAGAGATCCAAACAAATTTAGATAGGCGAAGAGTTGTGACTCATGCAAAAGCAAAAAGCAAGAGTGAGAAATTTCCACCCCCTCACCAGGATGGAGCTGTTGGATATCCATTGGATAAATCACAAAAGGGACCCGTTTCATTTGGTGCCACTGATGCATCCTCTGGCTCAGCAATGTTTAATTCAAAACCTTCAGGATGTGTTAGAAGTCATGATGCTGCAGCAGGACCTTACAGAGGGAGGAAAATTAAGAAAACAGACTCCCAAATGGCATCATCATGGAAATTTATGCGTGCATTCAAGCCATCATCAATAGGCCCATCAACCGATTTGTTATTTAGGGCCAAATAA 1713 0.4641 MGCVLGAPTAAGGRRTDSRAQHRRRSSQQNSVTDKSNAVGVGNEGTARERQRIRNNGDFLGNLPAPERRKPSLDPWAKTQQGWPSWLMAVAGDAIRDWTPRRANTFEKLAKIGQGTYSNVYKAKDLLTGKIVALKKVRFDNLEPESVKFMAREILVFRRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQIKCYMKQLLSGLEHCHSQGVLHRDIKGSNLLIDDEGILKIADFGLATFYDPEQKQPMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILGELIAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQPYKRGILETFRDFPPSSLPLIETLLAIDPDDRSTALAALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALNGKANAVDGARRVRVRERGRAIPAPEANAEIQTNLDRRRVVTHAKAKSKSEKFPPPHQDGAVGYPLDKSQKGPVSFGATDASSGSAMFNSKPSGCVRSHDAAAGPYRGRKIKKTDSQMASSWKFMRAFKPSSIGPSTDLLFRAK 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1488 570 PANTHER CELL DIVISION PROTEIN KINASE 104 394 - -
Glsi13g1488 570 MobiDBLite consensus disorder prediction 471 541 - -
Glsi13g1488 570 SUPERFAMILY Protein kinase-like (PK-like) 99 395 IPR011009 -
Glsi13g1488 570 MobiDBLite consensus disorder prediction 501 518 - -
Glsi13g1488 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Glsi13g1488 570 CDD STKc_CDK9_like 106 390 - -
Glsi13g1488 570 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Glsi13g1488 570 FunFam probable serine/threonine-protein kinase At1g54610 189 430 - -
Glsi13g1488 570 Gene3D Transferase(Phosphotransferase) domain 1 189 430 - -
Glsi13g1488 570 Pfam Protein kinase domain 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1488 570 MobiDBLite consensus disorder prediction 1 77 - -
Glsi13g1488 570 ProSiteProfiles Protein kinase domain profile. 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1488 570 Gene3D Phosphorylase Kinase; domain 1 92 188 - -
Glsi13g1488 570 MobiDBLite consensus disorder prediction 25 40 - -
Glsi13g1488 570 FunFam probable serine/threonine-protein kinase At1g54610 93 188 - -
Glsi13g1488 570 SMART serkin_6 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1488 Glsi-ChrGlsi13 31753522 31757468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1488 98 424 Core Cell Cycle Gene Families AT5G10270 51.714 7.27e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi13g1488 Pkinase 4.3e-66 CL0016