Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1481 ATGAAAGCTTCCGACACCGCCGATCCTATCCATCTCTCTAATCACCTTCTATCCTCTGTTCTGGACGAAATCCCCATCATTCACAACTTCAAGGGCAAATGGTCCCTTATCAGATCCAAACTCGCTCATCTTCATACTCAACTCGCTGATTTCTCCTCCGATTTCCCTAATTCCTCCTCTAACTCTCTTTCCCTCGACCTTCTTCACTCCATTTCCCACACCCTTAACGATGCCGTTTCCCTCGCCAAGGATTGCCAGTCTCCCAACTTATCCCAGGGCAAGCTCAAGACCCAGAGCGACATTGACTCCCTCCTCGCCAAGCTGGATCGCCACGTCAAAGATTGCGACATTCTCTTCAGAAGTGGCGTTCTGCAAGACGGCGCTGTTTCAACCGCGTCTACCAAGGACGCTGTTCGATCCGAATCCAGGAATTTGATTACTCGTTTGCAAATTGGGGCCGCCGAGTCGAGGATGTCCGCCATGGACTCCTTGCTGTTTTTACTCCAAGAGGATGATAAGAATGTGATGATAGCTGTGGCGCAGGGTGTGGTTCCTGTGCTCGTCCGCTTGCTGGATTCTAACTCTTCGGAAATGAAGGAGAAGATCGTTGCTGCCATCTCCAGAGTTTCCATGGTGGATGGTAGTAATCGTGTTTTAATCGCCGAGGGTTTGTTGCTTTTAAATAATTTGCTTCGAGTTCTTGACTCGGGGAGTGGGTTCGCCAAGGAGAAAGCTTGTATCGCCCTCCAAGCTCTAACTTTCTCTAAAGAAAACGCGAGGGCAATCGGGTCTAGAGGTGGAATTTCTTCACTATTGGATATTTGCCAAGTCGGCACGCCTGGTTCCCAAGCTTCCGCAGCAGCAGTTTTAAAAAATCTTGCAATCTTCTCTGAAATTAGAGAAAATTTCGTCGAGGAAAATGCGGTCGTTGTTCTATTGGGGCTCGCTTCTTCGGGAACTTTATTAGCCCAGGAAAATGCAATTGGTTGTTTGTCTAATATAATCTCTCACGATGAAAGCTTGAAACTTTTGATTGTTAAGGAAGGAGGGATTGAGTGTCTCAAGAATTTCTGGGACTCGGCTCCGGCAGTTCGGAGTCTCGAAGTTGCAGTGGAGTTGTTGAGGTACTTGGCTTCAAGTCCAGCGATTGCTGAAGTTCTTGTTTCGGATGGTTTTATACCCAGACTTGTAGGCTTGTTAAATTGTGGGGTACTAGGGGTGAGAATTGCAGCGGCTCGAGCTGTTTATGCCTTGGGGTTCAGTAGCACAAAGGGGAGGAAAGAGATGGGTGAATGCGGATGCATTATCCTATTGATCATGATGTTGGATGGTAAGGCTGTAGAAGAGAAAGAAGCAGCCGCAAAGGCTTTGTCAATACTCATGTTATCTGGGGGCAATAGAAGGATTTTCCGCCAGGAGGAGAGTGGTATAGTGAGAATGGTTCAACTGTTGGATCCATCAATACAGAATCTAGATAAGAAATACCCAGTCTCAGTGCTGGCCTTACTTGTCCATTCGAAGACTTGCAAGAAACAAATGGTAGCAGCCGGTGCTTGTGTACATACGCGAAAACTTGTAGAGATGGATGTTGAGGGATCTAAGAAACTATTGGAAAGCCTTGGCCGTGGTAAGATATGGGGAGTATTTGCCAGACCCTAG 1659 0.472 MKASDTADPIHLSNHLLSSVLDEIPIIHNFKGKWSLIRSKLAHLHTQLADFSSDFPNSSSNSLSLDLLHSISHTLNDAVSLAKDCQSPNLSQGKLKTQSDIDSLLAKLDRHVKDCDILFRSGVLQDGAVSTASTKDAVRSESRNLITRLQIGAAESRMSAMDSLLFLLQEDDKNVMIAVAQGVVPVLVRLLDSNSSEMKEKIVAAISRVSMVDGSNRVLIAEGLLLLNNLLRVLDSGSGFAKEKACIALQALTFSKENARAIGSRGGISSLLDICQVGTPGSQASAAAVLKNLAIFSEIRENFVEENAVVVLLGLASSGTLLAQENAIGCLSNIISHDESLKLLIVKEGGIECLKNFWDSAPAVRSLEVAVELLRYLASSPAIAEVLVSDGFIPRLVGLLNCGVLGVRIAAARAVYALGFSSTKGRKEMGECGCIILLIMMLDGKAVEEKEAAAKALSILMLSGGNRRIFRQEESGIVRMVQLLDPSIQNLDKKYPVSVLALLVHSKTCKKQMVAAGACVHTRKLVEMDVEGSKKLLESLGRGKIWGVFARP 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1481 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 182 224 IPR000225 GO:0005515
Glsi13g1481 552 SMART arm_5 338 379 IPR000225 GO:0005515
Glsi13g1481 552 SMART arm_5 296 336 IPR000225 GO:0005515
Glsi13g1481 552 SMART arm_5 422 462 IPR000225 GO:0005515
Glsi13g1481 552 SMART arm_5 255 295 IPR000225 GO:0005515
Glsi13g1481 552 SMART arm_5 171 211 IPR000225 GO:0005515
Glsi13g1481 552 SMART arm_5 380 420 IPR000225 GO:0005515
Glsi13g1481 552 Gene3D - 131 359 IPR011989 -
Glsi13g1481 552 SUPERFAMILY ARM repeat 144 490 IPR016024 -
Glsi13g1481 552 Pfam Armadillo/beta-catenin-like repeat 171 207 IPR000225 GO:0005515
Glsi13g1481 552 Gene3D - 360 539 IPR011989 -
Glsi13g1481 552 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1481 Glsi-ChrGlsi13 31549904 31551562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1481 111 465 U-box Gene Family AT2G23140 24.022 2.85e-11 64.3