Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1479 ATGGCAGCTTTTTCGTACCAATACCATCCTTTTCCTGTTGACTCCACATTTTTGCCCAATGCTTCCGTCAAGATTTCAGCTTTCACGGACCACCATGCTCCTCCTCCTTCCTCCCAACCTCTTCTCCAGACATCCTTCAATCAAGAAACTAGCTCTGTTGATCAAAGCTCCAAGTTCATTACTAGTGATAATGAGCCTTCTGTGACCAAAAACCAGAGTCCTGAGACCTCCGTGGTAGTGGATAAGCTTGAACCTGGCGAGCAGGTCACTCCTATGAAGAAGAAGAGGAGAAACAGAAATGGGTCTTCCTTGAGTTCCCCCCAATCTGTGGATGCGACAGGAGAAGGAAACAAGAAACGAAGGAAGAGCCATGGCGAGGTTGGAGAAGGGGATAAGCAAAAAGCTGAGAAGAATCAGAAAAAGAGTCCCGACGAGCCCCCAACAGGCTATATCCACGTAAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTAGCTGAAAGAGTACGAAGAGAGAAAATAAGCGAAAGGATGAAGATGTTGCAGCGACTTGTTCCAGGTTGTGATAAGGTAACTGGAAAAGCCCTCATGTTGGATGAAATAATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTCTTGTCAATGAAGCTTGCTTCTGTGAATCCCATGTTCTATGACTTCACAATGGACCTAGACACACTCATGGTTAGACCAGAGAAATCAAATTGCATCGCATCACCACAACTATCTATGCCACAATGCAGTCCCAACCAGGCCACAACTTTTGCTGATACAACCACAGTTACCACCACCACTGGCTTTCACACTGCTAATGACTATCTTTTGGACCATTCAGCTTCAATTTTTTTTCAGGGACATAGGTCAAACGTCTTCTCTGAGGATACTGGTAGTCCGTTCTGGGACGTAGAAGACCAACGACAAAAGTTTCTTCACCCATATGGGATCAGCAACAGCTTATTTTCCTTCAATCAACAATAA 1008 0.4514 MAAFSYQYHPFPVDSTFLPNASVKISAFTDHHAPPPSSQPLLQTSFNQETSSVDQSSKFITSDNEPSVTKNQSPETSVVVDKLEPGEQVTPMKKKRRNRNGSSLSSPQSVDATGEGNKKRRKSHGEVGEGDKQKAEKNQKKSPDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDFTMDLDTLMVRPEKSNCIASPQLSMPQCSPNQATTFADTTTVTTTTGFHTANDYLLDHSASIFFQGHRSNVFSEDTGSPFWDVEDQRQKFLHPYGISNSLFSFNQQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1479 335 MobiDBLite consensus disorder prediction 29 167 - -
Glsi13g1479 335 Gene3D - 156 228 IPR036638 GO:0046983
Glsi13g1479 335 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Glsi13g1479 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Glsi13g1479 335 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 48 258 IPR024097 GO:0006355
Glsi13g1479 335 FunFam Basic helix-loop-helix transcription factor 156 228 - -
Glsi13g1479 335 SMART finulus 165 215 IPR011598 GO:0046983
Glsi13g1479 335 MobiDBLite consensus disorder prediction 32 78 - -
Glsi13g1479 335 CDD bHLH_AtBPE_like 149 234 - -
Glsi13g1479 335 MobiDBLite consensus disorder prediction 114 143 - -
Glsi13g1479 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 226 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1479 Glsi-ChrGlsi13 31531828 31533454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1479 1 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 43.382 7.99e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi13g1479 HLH 2e-06 No_clan