Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1473 ATGTATCGCTCCTCTGGCTTCTCCCACCGCCAGTCCAGGCTCCATGATATCATGCCTTCTAGCGCGGGAGAACCATTCGAGGATGCAAAATGCCATACGCTTCCCGAGCAAACAACAGAAGTCAGTCTGTGGGAAAGGCTAGGTAAAGCTGCGATGTTGGACGTTGAATCAAGCTCCTTTTCCTGGGACAGGCTTTCTTCACTGCACCATGCTGAACACGGCAGCAGCAATGAACAATGTGAGGATGAAATGAACAAAGCTCTTGAGGTAACTGTAAATTCTGGGGGAGTTGTCTTCTTTGCCTTTTTCCATCGCTTGGGGAGTGATGATACTTTTCCAAAGGAGGCAGCAGCTGTTATAAAGATACCATCATCAAGAATGGCAACACAATCTGAACGACTTGGTTGTGAATTTGCCAAGTGGTTGGGAGTTCGAACTCCTCAGGCCAGAGTCATTCACAATACTAGTCCTGAATGGCTCCAAATAAAGGAAGCAGCAGAAAAAGCGAGAGATGCTGCGAATTCTGAAGGAGATGAAACTGGTGAAATGACGTGTTCAGAACTTTTGGAAGCACTGGATCTGAGCCGATGCCTCTTTTTTATGAGTTATGTACATGGGTCACCTTTACTAGAAAGTTCTAGTGCATTTGAATCCCGGGAAACTGTAGAAAGAACATCAGCAGCTCTTGGCAGGGTGTTGATGCTAGACCTTGTCATCAGAAATGAAGATAGGCTCCCCTGCCGCGAGCTTAGATGGCGTGGGAATTCTGCAAATTTGTTGTTGGCTGAAAATGTTATCTCTGCAAATACAGATGCATTAGAAGATGATTTTGATTCTGCAATTCATAGGTATAGACCAATGGTGATTAGTGCACTTCCAAGAGAAAGAAGGTCAACTTCAGTAGAAAGCAGAAGGAGTTCTCATAACCCTGGATTGGTATCGCAGGCCTCTGATATTTCAGAGATGGCCGATTCACCAAGATTCACCGACATGGGCCTTCAGAGTCAAACATCAAGTGAATCGCTGTTTAATGACTTTAACTTCAACATTGTGGCTATTGATTCTGGCGTTCCCCGCCGACCCCCTGCTGGAAAACGTGCAATTGATCAGGCTAATTATCCTAAGTTGGTTGAGTTACTACTCCATAGTTATGAGTTCGCCTCCAACCTCTTACATGATATAACTGGAGGGAAACTGGGATCTCCTTTGCCAGAAGACACAAATTCAACAACTGATGTTCAATCAAATGACATTGCATCAGCAGTTCAGGAGTTTCGTAGTGGTTTCCGTGCTTCTCTTAGGGACCTGCAGGGATTCCATATATTCCTACTTACACTCCACCAGAAACTAGATAGCTTGTTGCGATCATTTATGAACATTATAAGCAAAATATCATTGGGGGAGTTTGACAAAGAGGATTCAGTGACACCTGACTCACCTTCTCAGGTGGCTGGAGGTGGTAACTGTCCCTATCCGGCAAGTAAGGAAAGGTTGGTTAATGATAACTTTCAAGATTTTACTGATTCAGAATCACAGAGAATTGCTCCAAGGGCATTATCTTCTGGCAATAGAGATAGTTCTGAATCTGCTCCTCCCATGACAAGAGAAAATTGGCATGGAAAGCTCTATAAAGGAAGCGGGGAGCCACATCGTAGTCTCCGCTTGACAGCAAAACTGCGAGACTTCCACAGATTTTCCAAGGTCGATGCAGAATCTAACAAAGAATTGGAACAGTGGAATGAAATGCTTAAAAATGATGCTGTCAAGCTATGCCAGGAGAATAATTTTAATACAGGATTTTTTGAGGGTAGTGATAATAACTGCGCAATTGATGCTTATGAACTGAAGGTCAGACTTGAGCATATTCTTGAGAGGATTGCATTGATATCTGAGGCTGCAAATACAGAGAAGCCATCGCTTGTCACAAATAATTTGTTCATTGGTGGAGCACTGGCTGCAAGATCTTTATACACACTTCAACAATTGGGAATCACACATATTTTGTGTTTGTGTACGAATGAAATTGGACAATCAGATTCTCAGTTTCCTGATCTATTTGTTTACAAAAATTTCTCTGTATGTGACAGTGAAGATTTTAACATCAGTAGCATATTTGAAGAAGCTTGTGATCTAATAAATGATGTTGAAGAAAAAGGTCAGAGAGTGCTAGTACATTGCTTTGAAGGGAGAAGCAGAAGTGTGACATTGGTCCTTGCTTACTTAATGCTCAGGAAGAACTACACCCTATTAGAAGCATGGAATGCTCTGAAACGAGTTCACCGTCGAGCACAGCCAAATGATGGTTTTGCAAAGATATTAGTGGAACTGGATCAGAAACTGTATGGAAAAGTTTCCATGGTGTGGCAGCAAAGGAAACCTTTGATCAAAGTTTGCCCCATCTGCGGGAAGAATGTGGGACTCAGCAGCAGCTCACTTAAGCTCCATCTCCAAAAATCACATAAAAGGCTGTCATCAGGGAGTGTAGATAGTGCCATGAAAATGGAGATCCAGAAGGCTTTGGCAGCATTGAAGATTTGTCGTGGCGGGAGTGTTAGCCCCACGGAATGGCAGCCTCATTCTATTCTGGATGAATAG 2595 0.4316 MYRSSGFSHRQSRLHDIMPSSAGEPFEDAKCHTLPEQTTEVSLWERLGKAAMLDVESSSFSWDRLSSLHHAEHGSSNEQCEDEMNKALEVTVNSGGVVFFAFFHRLGSDDTFPKEAAAVIKIPSSRMATQSERLGCEFAKWLGVRTPQARVIHNTSPEWLQIKEAAEKARDAANSEGDETGEMTCSELLEALDLSRCLFFMSYVHGSPLLESSSAFESRETVERTSAALGRVLMLDLVIRNEDRLPCRELRWRGNSANLLLAENVISANTDALEDDFDSAIHRYRPMVISALPRERRSTSVESRRSSHNPGLVSQASDISEMADSPRFTDMGLQSQTSSESLFNDFNFNIVAIDSGVPRRPPAGKRAIDQANYPKLVELLLHSYEFASNLLHDITGGKLGSPLPEDTNSTTDVQSNDIASAVQEFRSGFRASLRDLQGFHIFLLTLHQKLDSLLRSFMNIISKISLGEFDKEDSVTPDSPSQVAGGGNCPYPASKERLVNDNFQDFTDSESQRIAPRALSSGNRDSSESAPPMTRENWHGKLYKGSGEPHRSLRLTAKLRDFHRFSKVDAESNKELEQWNEMLKNDAVKLCQENNFNTGFFEGSDNNCAIDAYELKVRLEHILERIALISEAANTEKPSLVTNNLFIGGALAARSLYTLQQLGITHILCLCTNEIGQSDSQFPDLFVYKNFSVCDSEDFNISSIFEEACDLINDVEEKGQRVLVHCFEGRSRSVTLVLAYLMLRKNYTLLEAWNALKRVHRRAQPNDGFAKILVELDQKLYGKVSMVWQQRKPLIKVCPICGKNVGLSSSSLKLHLQKSHKRLSSGSVDSAMKMEIQKALAALKICRGGSVSPTEWQPHSILDE 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1473 864 MobiDBLite consensus disorder prediction 295 319 - -
Glsi13g1473 864 Gene3D Protein tyrosine phosphatase superfamily 620 792 IPR029021 -
Glsi13g1473 864 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 706 758 IPR000387 GO:0016311|GO:0016791
Glsi13g1473 864 Pfam Actin-fragmin kinase, catalytic 40 327 IPR015275 -
Glsi13g1473 864 SMART dsp_5 637 779 IPR020422 GO:0006470|GO:0008138
Glsi13g1473 864 MobiDBLite consensus disorder prediction 510 548 - -
Glsi13g1473 864 FunFam Dual specificity protein phosphatase PHS1 609 783 - -
Glsi13g1473 864 MobiDBLite consensus disorder prediction 510 533 - -
Glsi13g1473 864 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 637 782 IPR029021 -
Glsi13g1473 864 CDD DSP 638 775 - -
Glsi13g1473 864 SUPERFAMILY Protein kinase-like (PK-like) 6 370 IPR011009 -
Glsi13g1473 864 MobiDBLite consensus disorder prediction 470 494 - -
Glsi13g1473 864 Gene3D - 209 463 IPR036940 -
Glsi13g1473 864 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 862 IPR035010 GO:0004721|GO:0009737|GO:0043622
Glsi13g1473 864 MobiDBLite consensus disorder prediction 1 25 - -
Glsi13g1473 864 MobiDBLite consensus disorder prediction 304 319 - -
Glsi13g1473 864 ProSiteProfiles Dual specificity protein phosphatase domain profile. 637 782 IPR020422 GO:0006470|GO:0008138
Glsi13g1473 864 Pfam Dual specificity phosphatase, catalytic domain 647 778 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1473 Glsi-ChrGlsi13 31497002 31501985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1473 2 848 Protein tyrosine phosphatase (PTP) family AT5G23720 63.892 0.0 1047