Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1471 ATGATATCTAGAGTGAACGGCGTTACTTGGATTGATGACAGAGAAGATGACGACCCTGCTTCCGCTTCTTGGGCTCTGAACTTCAAGGACAACATCAACTGCAGCACCGAGAAAAACAATTCTGTTTTTGTTGAGAACAAGGACGATATGGATTCTCTCTGTGCTTTTAAACCCATGCTTGAGGTCGATGAGGAATGGTATATGGCGAATACTAGTATCCAAAATCACACAGATATCAGGGACATCACCATCTCGCCGAATTTTGTTGACCCAGATAGTCTATTGCTGCACTCAGTGGACTCGTCCTCTCCATCTCCCTCTGCGTTCAACAATCTCGACCAATCTAAGGTGCAGTACTTTCTGCCTCCCAAGCCCACTATGTCTTCTCTTCTCAATGTCATTCCTAGCAACCCTTTGGAGCATGGTTTTGACATGGGCTGCGAGGTCGGGTTTCTTGATCCTCAAGCTTCCAGCTCGCCAGCAGTGCTGAACAGAGGAGCTGGCCTTTTGGGAAGCTTCCCCGAACTAGACTCAAATTGCCAGTTAAGCTATCCTAATTTGAGCTCAGATCCCCAATTGCCCACAATCTTGGCGGGTTCTGGAAAGGCGTTGTTTCTTAATAGGTCGAAGATATCGAGACCCCTTGAATCGTTACCTCCATCGGGGGCACAACCTACTCTTTTTCAGAAGAGGGTAGCTCTCGGAAAAAATTTGACATTGGCAGATGAAAGGGGCGATGTGGGGGGTTTGGGATCTCGAGGTGGTGTGGTTTCAAACAGGATTGAGAGAGACAGGGGGCAGTGTGAAATGGGAGAAGGGAATGATAAAAAAAGGAAGATGTATAATGGGGACGAGGTGGAAGATGGCAGTTTTGATGGGTCAGGATTGAATTACGATTCGGATGACTTGACTGAGAATAATAAGACGGAAGAAATTTCGAAGAATGGTGAAAACAGCTCAAACGCGAACGGCAGTATCACTGGCGGGGATCAGAAAGGGAGGAAGAAGGGAATGCCTGCCAAGAATTTGATGGCTGAACGCCGCCGTCGGAAGAAGCTCAATGATAGACTATACATATTGAGGTCCGTTGTTCCAAAAATTAGCAAGATGGACAGGGCTTCAATCCTTGGGGATGCAACTGAGTATGTGAAGGAACTTAAGCAAAGGATCAATGAGCTCCTAAACGAACTAGAGTCAACACCGGCTGCCTCAAGTTTCCAACCATCGACACCCGCACTACCCAGCCTTATAAAGGAGGAGCTTGGCCCCACCTTATTGCCAAGCTCTAATGGCCAAGCTGCTAGGGTTGAGGTTGGGATGCGTGAAGGGGGAGCAGTAGATATCCACATGTTGTGTGGACGCAAACCTGGTATCTTGCTCTCAACCATGAAGGCTTTGGATGATGTTGGGTTAGAGATACAGCAGGCTGTTATTAGCTGTTTTAATGGATTTGCTATGGATATCTTTCGAGCTGAGCTTATACGGCGGCACAAGTCACAAATGTAG 1506 0.4721 MISRVNGVTWIDDREDDDPASASWALNFKDNINCSTEKNNSVFVENKDDMDSLCAFKPMLEVDEEWYMANTSIQNHTDIRDITISPNFVDPDSLLLHSVDSSSPSPSAFNNLDQSKVQYFLPPKPTMSSLLNVIPSNPLEHGFDMGCEVGFLDPQASSSPAVLNRGAGLLGSFPELDSNCQLSYPNLSSDPQLPTILAGSGKALFLNRSKISRPLESLPPSGAQPTLFQKRVALGKNLTLADERGDVGGLGSRGGVVSNRIERDRGQCEMGEGNDKKRKMYNGDEVEDGSFDGSGLNYDSDDLTENNKTEEISKNGENSSNANGSITGGDQKGRKKGMPAKNLMAERRRRKKLNDRLYILRSVVPKISKMDRASILGDATEYVKELKQRINELLNELESTPAASSFQPSTPALPSLIKEELGPTLLPSSNGQAARVEVGMREGGAVDIHMLCGRKPGILLSTMKALDDVGLEIQQAVISCFNGFAMDIFRAELIRRHKSQM 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1471 501 Coils Coil 376 403 - -
Glsi13g1471 501 MobiDBLite consensus disorder prediction 313 328 - -
Glsi13g1471 501 MobiDBLite consensus disorder prediction 251 343 - -
Glsi13g1471 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 406 IPR036638 GO:0046983
Glsi13g1471 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Glsi13g1471 501 FunFam BHLH transcription factor 333 401 - -
Glsi13g1471 501 Pfam Helix-loop-helix DNA-binding domain 344 386 IPR011598 GO:0046983
Glsi13g1471 501 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 217 492 - -
Glsi13g1471 501 Gene3D - 331 401 IPR036638 GO:0046983
Glsi13g1471 501 SMART finulus 343 392 IPR011598 GO:0046983
Glsi13g1471 501 MobiDBLite consensus disorder prediction 258 286 - -
Glsi13g1471 501 CDD bHLH_AtAMS_like 340 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1471 Glsi-ChrGlsi13 31483676 31487091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1471 47 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 45.342 4.17e-96 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi13g1471 HLH 2.1e-09 No_clan