Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1469 ATGGCATCATCAGAGGTATCGATCAAGGGAATTTGCGTGAACGGGAAGGGGGAAAGCTACCCTTCTGGCTACAACAATCGTGACGATGCTCGGAACCCTACGGAGGGTCAGAATGCTCATTCATCATCAGCCGTGAGAGACGCGGAAGCTGCCCTCTACAGGGAGCTATGGCATGCTTGTGCTGGTCCCCTCGTCACAGTGCCCCGGGAAAGGGAGCGGGTCTTCTATTTTCCTCAGGGACACATCGAGCAAGTAGAGGCGTCCACGAATCAAGTGGCGGACCAGCATATGCCCGTGTACAATCTCCCACCCAAAATCCTTTGTCGGGTTATCAACGTGCTGCTGAAGGCTGAGCCGGACACCGATGAGGTCTTTGCCCAGTTGACCTTGCTGCCGGAGCCAAATCAAGATGAGAACGCTGTAGAGAAGGATCCCCCACCTCCTCCACCAGTACGATTTCACGTGCATTCATTCTGTAAAACCCTGACGGCCTCTGATACGAGTACTCATGGTGGATTTTCGGTGCTGAGACGTCATGCTGACGAATGCCTTCCTCCGCTGGATATGTCAAGGCAGCCACCGACCCAAGAGTTGGTGGCAAAGGATCTACACGGCAGTGAGTGGCGATTCAGGCACATCTTTCGAGGTCAACCACGTAGACACTTACTGCAAAGTGGTTGGAGCGTTTTTGTCAGCTCCAAGAGGCTTGTTGCTGGCGATGCATTTATATTTCTAAGGGGTGAGAATGGGGAACTTCGTGTTGGTGTCAGGCGTGCAATGAGACAACAGGGTAATGTTCCCTCCTCTGTGATCTCCAGTCACAGCATGCATCTTGGTGTCCTGGCAACTGCTTGGCACGCCATTTCGACAGGGACCATGTTCACTGTTTATTACAAGCCCAGGATTAGTCCTGCTGAATTTATTATTCCATATGATCAATATATGGAGTCTCTAAAAAGTAACTATACGATAGGGATGCGGTTCAAAATGAGGTTTGAAGGTGATGAGGCTCCAGAGCAGAGGTTTACGGGTACTGTTATTGGAATTGAAGATGAAGACCCTAACAGGTGGCCAGAATCCAAATGGAGATGCCTCAAGGTAAAATGGGATGAAACATCTAACATAACTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAACCTGCTCTTGCTCCTCTAGCTCTTAATCCTCTTCCTATGCCGAGGCCTAAAAGGCCCCGATCTAATGTGGTCCCATTATCACCTGATTCCTCTGTTCTTACTCGTGAAGTAAGTGTAGGCCCTTTCCCAGCAAGTGGATTTCCAAGGGTCTTGCAAGGTCAAGAAATCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGTCTGAGACTGCTGAAAAGCCTGTTGCACGACCACCTGCTGTAGATGATGAAAAGATTGACATGGTTTCCACTTCAAGTAGGTATGGTCCAGAGAACTGGATCTCAATTGGGAGGCATGAGCATGCATATTCGGATCTGCTTTCAGGCTTTGGGGCAAGTGGAGATCCTTCCCGTCCATCCTTGGCTGATCAAACTGGCCCTGTTGCTAATCCTGCTAGAAAACATGTATTAGATCATGAAGGCAAGTTTAACATGTTAGCCAGTCGATGGCCTGTAGCGTCTTCCGGTCTATCACTAAACCTATTGGACTCCAATATGAAAGGTTCTGCACAAGGTGATGTAACTTGCCAAGCTCGAGGGAATGTGAGGTATGGTGCATTTGGCGACTACCCTGTGCTTAATGGTCATAAAGTTGAGCATCAGTATGGAAACTTGATGCCGCCACCACCACCCCCGATTCAATACGATAGTCCCCGTTCAAGAGAGCTGATGCCCAATGCAAAATTGCCAAGAACATGTGAGACTGTGAAAGCAAAAGATGGGGACTGTAAACTATTTGGCATCTCACTTGTCAGTAGCCCAATTCAATCAGAGCCTTCTGTTTTACGAAGAAATGTGACAAGTGAGCCAGCCAGTCACTTGCGCCATGCATCAAACCAGCCTCATACTTCTGAAAATGATCAGAAATCAGAACAATCAAGGGGCTCAAAACCAGCAGATGTTATAGTTGGTGTTTATGACCATGAGAAGCCATTACAAACATTTCAGCCGCACCTGAAAGATGTTCAAGCCAAACCACACAGTTGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGGATCGCGCTTGGTAGGTCAGTGGACCTTACGAAGTTCAGCAACTATGATGAATTAGTTGCTGAATTGGATGAACTGTTTGAATTTGAAGGTGAATTAGTGTCTCCAAAAAAGGATTGGCTTATTGTCTATACTGATAATGAGGGTGACATGATGCTTGTTGGGGATGATCCGTGGCAGGAGTTTTGTGGCATGGATTGA 2406 0.4767 MASSEVSIKGICVNGKGESYPSGYNNRDDARNPTEGQNAHSSSAVRDAEAALYRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVADQHMPVYNLPPKILCRVINVLLKAEPDTDEVFAQLTLLPEPNQDENAVEKDPPPPPPVRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRISPAEFIIPYDQYMESLKSNYTIGMRFKMRFEGDEAPEQRFTGTVIGIEDEDPNRWPESKWRCLKVKWDETSNITRPERVSPWKIEPALAPLALNPLPMPRPKRPRSNVVPLSPDSSVLTREVSVGPFPASGFPRVLQGQEISTLRGNFAESNESETAEKPVARPPAVDDEKIDMVSTSSRYGPENWISIGRHEHAYSDLLSGFGASGDPSRPSLADQTGPVANPARKHVLDHEGKFNMLASRWPVASSGLSLNLLDSNMKGSAQGDVTCQARGNVRYGAFGDYPVLNGHKVEHQYGNLMPPPPPPIQYDSPRSRELMPNAKLPRTCETVKAKDGDCKLFGISLVSSPIQSEPSVLRRNVTSEPASHLRHASNQPHTSENDQKSEQSRGSKPADVIVGVYDHEKPLQTFQPHLKDVQAKPHSCSARSCTKVHKKGIALGRSVDLTKFSNYDELVAELDELFEFEGELVSPKKDWLIVYTDNEGDMMLVGDDPWQEFCGMD 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1469 801 FunFam Auxin response factor 156 260 - -
Glsi13g1469 801 SMART B3_2 158 260 IPR003340 GO:0003677
Glsi13g1469 801 FunFam Auxin response factor 321 392 - -
Glsi13g1469 801 Gene3D - 723 800 - -
Glsi13g1469 801 ProSiteProfiles PB1 domain profile. 727 801 IPR000270 GO:0005515
Glsi13g1469 801 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 800 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi13g1469 801 MobiDBLite consensus disorder prediction 652 681 - -
Glsi13g1469 801 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi13g1469 801 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Glsi13g1469 801 SUPERFAMILY DNA-binding pseudobarrel domain 155 287 IPR015300 -
Glsi13g1469 801 Coils Coil 800 801 - -
Glsi13g1469 801 MobiDBLite consensus disorder prediction 652 692 - -
Glsi13g1469 801 CDD B3_DNA 156 258 IPR003340 GO:0003677
Glsi13g1469 801 Gene3D - 155 260 IPR015300 -
Glsi13g1469 801 Pfam AUX/IAA family 773 798 IPR033389 -
Glsi13g1469 801 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Glsi13g1469 801 MobiDBLite consensus disorder prediction 21 43 - -
Glsi13g1469 801 SUPERFAMILY CAD & PB1 domains 728 799 - -
Glsi13g1469 801 Gene3D - 321 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1469 Glsi-ChrGlsi13 31478645 31482944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1469 1 800 B3 DNA Binding Superfamily AT5G62000 64.329 0.0 1028
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi13g1469 AUX_IAA 6.3e-09 CL0072