Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1468 ATGCATTTCGCGAAACTTGATGATTCGCCCATGTTCCGGCAACAGCTGCAATGCTTGGAAGAAAGTGTAGACTCATTACGGACGAGATGCTGGAAGGTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGGAGAGGGATATGATGGGGACATTGCTTTTGCAAGTGCCCTTGAATCTTTTGGGGGAGGGCATGGTGATCCTCTCTTTATTGCTTTGGGAGGACCTGTCATGACTAAATTCACTATTGCTTTGAGAGAAATTGGTACTTATAAAGAAGTTCTTCGATCACAGGTGGAGCACATGCTAAATGATCGGATGCTACACATTCTTAATGTTGACATCCATGATGTCAAGGAAGCTCGGAAGCGTTTTGACAAAGCGTCCCTTGTATATGACCAGGCACGTGACAAGTTTCTGTCATTGAGAAAGAGCACTAAGATTGATATTGCCGCTGTCATAGAAGAGGAATGGCACAATGCAAGAAACTCATTTGAGGAAGCCCGTTTCAATCTGGTTAGTGCTCTTAATAATGTCGAGGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCTCTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAACTATTGCATCAAATGGAACCTTTCATTAGCGAGGTTTTGGCTTATGCACAGAAGTCAAGGGAGAATTACAATATGGACCAGATTTCTCTTAATGAAAGAATGCAAGAGTACAAAAGACAAATTCATCAAGAAAGTAGATTGTCCTTGAATGGCCCCTATGGTTCTCCTTCTGCAGACTGTGTACAGCCCTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAAAGGAATCTGCAGCAAATGGAAAGGTTCAAATTATTCGACAAGGATTTCTTTCAAAACGATCCTCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTGGTCACATAGTGGCAATCAACCATCTGCACTGAGAAATAATGCCACTGAAAATGGTTCCGGGCTTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGGGTTCATGATGAAAGATCTGTAGCACGTCATGCAGTGAACCTGCTTACATCCACAATTAAGGTTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCAGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCGGAAAATGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGAGTAATTGCTTCCTTGTTGAGTGTGCAGTCAGTAGAAATGCCTCTCTCAGCTGATTCTGAAAGCGGTGACTGTTACTCTGCCAGCAATATTGATATGTTAGAAAGCCCACTAGATGATGATCAGGCAGTGACTAAGGAGCATGCATCCCAGAATTTCACTTCTAGTGACCACTTCCGTGCATCTAAAAGTTTGCAGTTGCATAAACCCAGTGTAAAAAATGAAAAACCAATTGATGTTCTTAGAAGGGTATGTGGGAATGACAGATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCCTAAACCTTGGCATTCTTATATGCATTGAGTGTTCGGGTGTTCATCGTAATCTTGGTGTACACATATCAAAAGTAAGATCGCTGACTCTTGATGTAAAAGTTTGGGATCCTTCTGTCTTAACCATGTTTCAGTCACTAGGCAATCACTTTGCAAACTCAGTCTGGGAAGTGCAGTTGCATTCAACAAGTACTTTGAAAGCCGATGATACACCTGTTGGAAACAAGTTATTTCATGCGAGGAAACCGGAACATGATGATCCTATATCATTAAAAGAGAGGTTCATTCATGCAAAGTATTCTGAGAAAGTCTTCATTCACCAGATAAAGAAAAACGACCATCTCCTTTCAGTGGCACAAGAGTTATGGGAAAGTGTCTGTAACAATGACAAGAAAGCAGTGTACCAGTATATTGTGAAGTCTGATTTGGATATCAATGCTATCAGTGGGCAAGAATATTATGGTGACGCTTTTGACATGCCCTCTTCAAGTAATTCAAAATCTTCATGTGAAAGTGAAAATCAGCAAATAGAGGACATACTGGATGGTTCTAGTGTGCTTCACCTGGCATGCCTAACAGCTGACATCGGCATGGTGGAGCTTCTCCTACAAAATGGTGCAGATATAAATGCTTCTGATTCAAGAGGTCGCACACCACTGCATTATTGTATTATCAAAGGGAATACTGCAGCTGCGAAAGTGCTTCTTATGAGGGGGGCCAATCCACATGCCCTAGATGAAGGCGGCAATACTCCTCTTAAGCTTGCATCAGAATCTGGTTCTGTTGGCAATGACGTTCTCGCCCTCTTGACTAGAAGATGA 2397 0.4197 MHFAKLDDSPMFRQQLQCLEESVDSLRTRCWKVYKGCRKYTEGLGEGYDGDIAFASALESFGGGHGDPLFIALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRMLHILNVDIHDVKEARKRFDKASLVYDQARDKFLSLRKSTKIDIAAVIEEEWHNARNSFEEARFNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFISEVLAYAQKSRENYNMDQISLNERMQEYKRQIHQESRLSLNGPYGSPSADCVQPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNWSHSGNQPSALRNNATENGSGLLSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQSDLRFCFRIISPVKNYTLQAENALDQMDWIEKITGVIASLLSVQSVEMPLSADSESGDCYSASNIDMLESPLDDDQAVTKEHASQNFTSSDHFRASKSLQLHKPSVKNEKPIDVLRRVCGNDRCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEVQLHSTSTLKADDTPVGNKLFHARKPEHDDPISLKERFIHAKYSEKVFIHQIKKNDHLLSVAQELWESVCNNDKKAVYQYIVKSDLDINAISGQEYYGDAFDMPSSSNSKSSCESENQQIEDILDGSSVLHLACLTADIGMVELLLQNGADINASDSRGRTPLHYCIIKGNTAAAKVLLMRGANPHALDEGGNTPLKLASESGSVGNDVLALLTRR 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1468 798 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Glsi13g1468 798 SMART arf_gap_3 499 638 IPR001164 GO:0005096
Glsi13g1468 798 Pfam Putative GTPase activating protein for Arf 502 632 IPR001164 GO:0005096
Glsi13g1468 798 SUPERFAMILY ArfGap/RecO-like zinc finger 498 632 IPR037278 -
Glsi13g1468 798 CDD BAR_SFC_plant 15 215 IPR035670 -
Glsi13g1468 798 ProSiteProfiles Ankyrin repeat profile. 740 772 IPR002110 GO:0005515
Glsi13g1468 798 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 481 639 - -
Glsi13g1468 798 Gene3D - 285 438 IPR011993 -
Glsi13g1468 798 SUPERFAMILY PH domain-like 293 449 - -
Glsi13g1468 798 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Glsi13g1468 798 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Glsi13g1468 798 Gene3D - 636 798 IPR036770 -
Glsi13g1468 798 Pfam PH domain 294 427 IPR001849 -
Glsi13g1468 798 ProSiteProfiles Ankyrin repeat region circular profile. 707 738 - -
Glsi13g1468 798 SMART PH_update 293 430 IPR001849 -
Glsi13g1468 798 ProSiteProfiles Ankyrin repeat region circular profile. 740 772 - -
Glsi13g1468 798 ProSiteProfiles ARF GTPase-activating proteins domain profile. 499 638 IPR001164 GO:0005096
Glsi13g1468 798 Pfam BAR domain of APPL family 6 231 IPR004148 GO:0005515|GO:0005737
Glsi13g1468 798 ProSiteProfiles Ankyrin repeat profile. 707 739 IPR002110 GO:0005515
Glsi13g1468 798 SUPERFAMILY Ankyrin repeat 654 787 IPR036770 -
Glsi13g1468 798 SMART ANK_2a 740 769 IPR002110 GO:0005515
Glsi13g1468 798 SMART ANK_2a 707 736 IPR002110 GO:0005515
Glsi13g1468 798 PRINTS HIV Rev interacting protein signature 530 547 IPR001164 GO:0005096
Glsi13g1468 798 PRINTS HIV Rev interacting protein signature 553 574 IPR001164 GO:0005096
Glsi13g1468 798 PRINTS HIV Rev interacting protein signature 511 530 IPR001164 GO:0005096
Glsi13g1468 798 Gene3D Arf GTPase activating protein 479 635 IPR038508 -
Glsi13g1468 798 CDD ArfGap 502 625 - -
Glsi13g1468 798 PANTHER CENTAURIN/ARF 3 796 IPR045258 GO:0005096
Glsi13g1468 798 Coils Coil 227 247 - -
Glsi13g1468 798 Pfam Ankyrin repeats (3 copies) 712 794 IPR002110 GO:0005515
Glsi13g1468 798 CDD PH_ACAP 295 432 - -
Glsi13g1468 798 Coils Coil 118 138 - -
Glsi13g1468 798 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1468 Glsi-ChrGlsi13 31456420 31467506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1468 491 631 C2H2 Transcription Factor Family AT4G21160 39.437 6.68e-21 93.2