Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1462 ATGGTACCCAAACGCGACGAGGAACGGGGATCCATAGCATGTTCTTTTAAGCGAAGTTTTTGTTTATTGTCAAATCTTTACCAAAATGTTCCGAAAATTTGATTGGCAGTTGCTGAATTTTGTGGAGAAACCGAGGGAGAAAGGATTTTGGATTTTGTGAGCCAGCGAGATGGTGTTCAATTTGAGAAGGTGCGAGTTTTGATGCCTTTTGAAATAATGGGTCAGAGGGGCGTATCTGCCTCATCCCACATTTTTGATGACAATTCCTTTCATTCTGAGAGGAATGTTGGATTGCAAAAGCCAAAATCCATTCATGACCATTACCCACAAGATGGAATAATGATTATCCATATAGAAAGAACACTTAATATGAGTAATAGCGTTAGTTCTAAAATTAATGCCTTTGTATCAGTTTGTGGTGAATACTTCATTGCTGCAGTCAATATTGAAATTCTGCCAAAAATTGCAGCATCACATTGCAGCATTATGAATACTTCATCACCTCTAGAAACGAGTGCAAAGTCAGGCTTGCACATGTCACAGAGAAGCTTGTCTGGAGAAGTTACAGAAAACCTACAGGTTGGTGGAGGAGGAATTATTGATGTGAGGGCTTCCAAGGAATCATTGAATCATCATCCCAGATCATGGTCTAATGTTTTTATGCAGCCAGAATCTACCTCACATGGTTTAACTGGGAACAAGATTGTCACTAATGGTGCTTCTCGTGAAAGTAGTCTATTCTCTAGCTCACTATCTGAGATATTTAGCCAAAAATTGAGGTTAACTGGGAATGGTGTTCTGTCTCATCAGCCTGTTACCATTGGTTCCCTTCCCGAGGAAGAACCGTATAAATCTCTTAAAGAAATTGAGGCTGACACTATTGGGAATCTCCTTCCTGATGAAGATGACCTATTTTCTGGTGTTACCGATGAATTAGGATACAATGCTCATGCCAGAACAAGTGATGACTTTGAAGATTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGGGATGAACATCTAAATTTGGGAAGAAGAATCAGTGGTCTGGATGGAGATTCTGGTTATTTTGGAGGTTATAAAGGAAAACTTCCTTTTGGTGAACAACCTTCAAGAACACTTTTTGTTAGGAACGTCAATAGTAATGTTGAAGATTCTGAGCTAAAGGCTCTCTTTGAGGTGCATCCTTATTCTTCAATGCTGCAATATGGAGACATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGCAAACGCTTCAAAACAGGTCATTGAGGTCTAGGAAACTTGACATACATTATTCAATTCCAAAGGGCAATGCTCCAGAAAAGGATATTAGCCACGGTACACTGGTGCTATCTGGTCTTGATCCTTCTGTTTCAAATGATGAGCTTCAACAGATTTTTGGATTTTATGGAGAAATAAAAGAAATCTATGAATCTCCAGAAGTGAATTACAAAAAATTTATTGAATTTTATGATGTGCGAGCTGCGGAAGCTGCTCTTCGTGCATTAAACAGGAGCGACATTGCTGGGAAGCAGATCAAGCTTGAACCCAGCCATCCTAGGGGTGTAACATGTCTGATGCAGCAGTCTCACAAGGGGCAAGATGAACCTGATTTTGGTCAAGGTCTTTGTGACAACTTATCACTGAAACAGAAGGCAACAATGTCTTCTGGAGTAATTGCATCTGGCTGCTTAGAAAATGGATCTAATCCGGGATTTCAATCTGCAATTCAGAAACCTATTATTGCATTCGTTGATAACTCATTCTCTCATGTGAATTCTAGCATTCACAAAACAGTGAGAGGGCAATCTTCTGGAAAAGTACCCGGTGTTTGCGAGTCAAGTAACTTTCTTGATGCAATGAAATTTGCGTCTATTCCAAGATTCCATCCTCATTCCCTTCCTGATTATCATGATAGTTTAGCCAATGGTAGTGCTTACAACTTTTCCTCCATCATTGGCAATGTGGCTGGCGACATTGGTTCTGGAGTAACAGAAGGCTCTGATAGCAGGCACATTCAGGGAATGGGTTCAACTGGGAATCTGATGGAATTTAATGGAGCAGGAAATGGGAGCCACCCACGTCATGGACTTTATCCTGTGTGGAACAGCTCCAATTTGCAGCAGGAGCCTTCACCAAGCCCCATGCTTTGGCAGAAATCACCATCATTTGTTAATGGTGGTTGTGCTCCTTGCCTTCCACAGATTCCTAGCTTTCCTAGAACACAGCCTCATATGTTGAGAGCATCACATATAGACCACCATGTTGGTTCAGCACCAGTTGTTACAGCCTCCCCGTGGGACAGGCAACATTCTTATTTGGGAGTGTCTCCTGAAGCTTCTGGTTTTCGCTTGGGTTCTCTAGGAAGTGCAGGGTTACCTGGTTCCTGGCAATTGCATCCGCCGGAATTTTCTTCTCACAACATGTTTTCTCATATTGGTGGGAATGGCACAGATTTGACTTCCAATGCTGGGCAGAGCTCTCCGAAGCAGTTGTCACATGTTTTCCCTGGGAGACATCCCATGACTTCAATGTCTAAATTTGATTCCAATGAACGAATGAGAAACTTGTGTCCCCGTAAAAGTGAAGCTAACACTAACAATGCTGATAAAAGACAATATGAACTTGACCTAGGCTGTATATTGCGTGGGGAAGACAACCGAACAACGCTTATGATTAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCTATAGATGAACAATGTCGGGGAACTTATGACTTTCTTTATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCATTCATTAATATGATTGATCCAGCTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAAAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCTCGAATTCAGGGGAAAGCTGCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGTCCTATTCTCTTCCACACAGATGGCCCAAATGCTGGTGATCCGGAGCCCTTCCCCATGGGTACTAATATTAGATTGAGACCTGGAAAATCTCGCACTTGTGGTAATGAGGAGAATCGCAGCCAAGGGAGTCCTTCGACTTTGGCAAGTGGAGAGGGGTCTACTAATGGAATAGATTCTTCATTGAGCTCTTCACGGAATTCTGACTGA 3258 0.4156 MVPKRDEERGSIACSFKRSFCLLSNLYQNVPKIXLAVAEFCGETEGERILDFVSQRDGVQFEKVRVLMPFEIMGQRGVSASSHIFDDNSFHSERNVGLQKPKSIHDHYPQDGIMIIHIERTLNMSNSVSSKINAFVSVCGEYFIAAVNIEILPKIAASHCSIMNTSSPLETSAKSGLHMSQRSLSGEVTENLQVGGGGIIDVRASKESLNHHPRSWSNVFMQPESTSHGLTGNKIVTNGASRESSLFSSSLSEIFSQKLRLTGNGVLSHQPVTIGSLPEEEPYKSLKEIEADTIGNLLPDEDDLFSGVTDELGYNAHARTSDDFEDFDLFSSGGGMELEGDEHLNLGRRISGLDGDSGYFGGYKGKLPFGEQPSRTLFVRNVNSNVEDSELKALFEVHPYSSMLQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQTLQNRSLRSRKLDIHYSIPKGNAPEKDISHGTLVLSGLDPSVSNDELQQIFGFYGEIKEIYESPEVNYKKFIEFYDVRAAEAALRALNRSDIAGKQIKLEPSHPRGVTCLMQQSHKGQDEPDFGQGLCDNLSLKQKATMSSGVIASGCLENGSNPGFQSAIQKPIIAFVDNSFSHVNSSIHKTVRGQSSGKVPGVCESSNFLDAMKFASIPRFHPHSLPDYHDSLANGSAYNFSSIIGNVAGDIGSGVTEGSDSRHIQGMGSTGNLMEFNGAGNGSHPRHGLYPVWNSSNLQQEPSPSPMLWQKSPSFVNGGCAPCLPQIPSFPRTQPHMLRASHIDHHVGSAPVVTASPWDRQHSYLGVSPEASGFRLGSLGSAGLPGSWQLHPPEFSSHNMFSHIGGNGTDLTSNAGQSSPKQLSHVFPGRHPMTSMSKFDSNERMRNLCPRKSEANTNNADKRQYELDLGCILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRLRPGKSRTCGNEENRSQGSPSTLASGEGSTNGIDSSLSSSRNSD 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1462 1085 CDD RRM3_MEI2_like 912 997 IPR034454 -
Glsi13g1462 1085 SUPERFAMILY RNA-binding domain, RBD 372 542 IPR035979 GO:0003676
Glsi13g1462 1085 FunFam Protein MEI2-like 1 467 561 - -
Glsi13g1462 1085 Gene3D - 466 560 IPR012677 -
Glsi13g1462 1085 MobiDBLite consensus disorder prediction 720 738 - -
Glsi13g1462 1085 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 468 541 IPR000504 GO:0003723
Glsi13g1462 1085 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 375 456 IPR000504 GO:0003723
Glsi13g1462 1085 CDD RRM1_MEI2_like 374 457 IPR034453 -
Glsi13g1462 1085 Gene3D - 369 465 IPR012677 -
Glsi13g1462 1085 MobiDBLite consensus disorder prediction 1020 1085 - -
Glsi13g1462 1085 MobiDBLite consensus disorder prediction 829 867 - -
Glsi13g1462 1085 SUPERFAMILY RNA-binding domain, RBD 911 996 IPR035979 GO:0003676
Glsi13g1462 1085 SMART rrm1_1 911 987 IPR000504 GO:0003723
Glsi13g1462 1085 SMART rrm1_1 469 537 IPR000504 GO:0003723
Glsi13g1462 1085 SMART rrm1_1 376 452 IPR000504 GO:0003723
Glsi13g1462 1085 MobiDBLite consensus disorder prediction 829 854 - -
Glsi13g1462 1085 PANTHER RNA RECOGNITION MOTIF-CONTAINING 217 1079 - -
Glsi13g1462 1085 MobiDBLite consensus disorder prediction 688 707 - -
Glsi13g1462 1085 MobiDBLite consensus disorder prediction 686 738 - -
Glsi13g1462 1085 MobiDBLite consensus disorder prediction 1051 1085 - -
Glsi13g1462 1085 Pfam RNA recognition motif 2 909 1005 IPR007201 -
Glsi13g1462 1085 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 470 535 IPR000504 GO:0003723
Glsi13g1462 1085 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 449 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1462 Glsi-ChrGlsi13 31417958 31427114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1462 370 534 Eukaryotic Initiation Factors Gene Family AT3G16380 24.731 7.81e-06 48.1