Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1442 ATGGAGTGGAATTTGAAAGCTTCTTCTTGGGATTTGGCGGAATTAGATGAACCGGCCTTACCCAACATAGAAACAGTTGATGGGCCAAGCATATTTGGAGTTGGAGTTAATAGAAGTAAAGGGGAATTTTCTGTTGATTTGAAGCTTGGGCAGGTAGGGAATTCTGGGACTGATTCATCAGTGCCCAAGTGGAAAGATGCCGGTGGAGTGTCCAAAGCCGTATCGTCATCTTCAGGATCATCGAAGAGGGCTCGAGCAATTAACAACGGAACCCAGACGGTGTCATGCCTTGTGGACGGGTGCAATTCAGATCTTAGTAATTGTAGGGACTATCATAGGCGCCATAAGGTCTGCGAACTCCATTCCAAGACACCCCAGGTCACTATTGGCGGCCACAAGCAAAGGTTCTGCCAACAGTGCAGCAGGTTCCATTCGCTAGAGGAATTTGATGAGGGAAAGAGAAGCTGCAGGAAGCGTCTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAGCCAGAACCTCTGACGCGATCCGGTAGCTTTTTGTCGAATTACCAAGGCACCCAGATGTTACCCTTCGCAAGTACACCTGTATATCCTTCCACTGCTGTGGTGAACCCTGGTTGGAGTACTGGAGTTGTGAGTTCATGTGCAGATGCTAGGCTCCACCATAAGCAGGACCTGTTTCTGGGATCTCCTCCCAGCAGCTATAAAGAAAGGAAGCAAATCCCATTTTTACAAGGTGACAATGCCACACTCAACAACCAAAACCCAACTCTTCAAGTCCAAGCTGCTTCTGTGTGCCACACACATGTGAGGACTAGCTCTTTATCAGAAAGAAACAAAATGATGTGTGATGCCTTGACAACTCCGGTTCCCGACTCTCCTTGTGCTCTCTCTCTTCTGTCATCACCACACACGCACACACCAATGGCACCGGAGCCTCATCACACAATGTCCCTCATGCAGCCCTTAGGCCTCAGCCTCCATGACAACAGCTTAGAGTCCGTGGACCCGGTTCTGGTTTCCAGTGGGAGTGACCATTGTCATCCATCCCTGTATAACATGGGGACTCATGCATCCCAGGGGAACGAACAGCCACAACCTCTTCCCTTCCATTGGGAATAG 1128 0.4965 MEWNLKASSWDLAELDEPALPNIETVDGPSIFGVGVNRSKGEFSVDLKLGQVGNSGTDSSVPKWKDAGGVSKAVSSSSGSSKRARAINNGTQTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQMLPFASTPVYPSTAVVNPGWSTGVVSSCADARLHHKQDLFLGSPPSSYKERKQIPFLQGDNATLNNQNPTLQVQAASVCHTHVRTSSLSERNKMMCDALTTPVPDSPCALSLLSSPHTHTPMAPEPHHTMSLMQPLGLSLHDNSLESVDPVLVSSGSDHCHPSLYNMGTHASQGNEQPQPLPFHWE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1442 375 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 368 IPR044817 GO:0003677
Glsi13g1442 375 MobiDBLite consensus disorder prediction 56 85 - -
Glsi13g1442 375 FunFam Squamosa promoter-binding-like protein 14 87 157 - -
Glsi13g1442 375 SUPERFAMILY SBT domain 94 175 IPR036893 GO:0003677|GO:0005634
Glsi13g1442 375 MobiDBLite consensus disorder prediction 71 85 - -
Glsi13g1442 375 ProSiteProfiles Zinc finger SBP-type profile. 93 170 IPR004333 GO:0003677
Glsi13g1442 375 MobiDBLite consensus disorder prediction 356 375 - -
Glsi13g1442 375 Gene3D - 87 157 IPR036893 GO:0003677|GO:0005634
Glsi13g1442 375 MobiDBLite consensus disorder prediction 159 180 - -
Glsi13g1442 375 Pfam SBP domain 96 169 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1442 Glsi-ChrGlsi13 31281165 31283493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1442 1 375 SBP-box Gene Family AT5G50670 46.310 1.57e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi13g1442 SBP 1e-30 No_clan