Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1429 ATGGAGAACAACCAGCAAACCCAATCATCCTCGTACCCACCTCAACCCCCTGCTCCTCCTCCTTACCACCACCTTCTCCAACAGCAACAGCAGCAGCTGCAGATGTTCTGGACTTACCAGCGCCAAGAAATCGAGCATGTCAATGATTTTAAGAACCACCAGCTCCCTCTCGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCTCTGCCGAGGCACCCATCTTGTTCGCCAAGGCCTGTGAGCTTTTCATTCTTGAACTTACTATACGATCTTGGCTCCACGCCGAGGAGAACAAGAGGAGGACCCTCCAGAAGAACGATATAGCCGCTGCCATTACCAGGACTGACATCTTCGATTTTTTGGTCGATATTGTTCCCAGGGATGAGATCAAGGACGAGCCTGGCCTTGGTGGTATGGTGGGGACCATATCTAGCGGTGTCCCTTACTATTACCCCCCCATGGGGCAACCTGCTGGCCCTCCGGGTGGTATGATTGTCGGACGGCCCGCGGTTGATCCCTCGGGAGTGTACGTGCAGCCACCATCGCAAGCATGGCAGTCAGTGTGGCAAACCGCAGCTGAGGATGGATCATACGGGAGCGGAGGAAACAGTGGACAGGGCAATCTTGATGATCAGAGTTGA 657 0.5449 MENNQQTQSSSYPPQPPAPPPYHHLLQQQQQQLQMFWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEPGLGGMVGTISSGVPYYYPPMGQPAGPPGGMIVGRPAVDPSGVYVQPPSQAWQSVWQTAAEDGSYGSGGNSGQGNLDDQS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1429 218 SUPERFAMILY Histone-fold 7 126 IPR009072 GO:0046982
Glsi13g1429 218 FunFam Nuclear transcription factor Y subunit gamma 23 132 - -
Glsi13g1429 218 MobiDBLite consensus disorder prediction 1 23 - -
Glsi13g1429 218 Gene3D Histone, subunit A 22 132 IPR009072 GO:0046982
Glsi13g1429 218 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 27 153 - -
Glsi13g1429 218 MobiDBLite consensus disorder prediction 197 218 - -
Glsi13g1429 218 Pfam Core histone H2A/H2B/H3/H4 16 117 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1429 Glsi-ChrGlsi13 31217128 31220050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1429 22 201 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.525 7.35e-108 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Glsi13g1429 CBFD_NFYB_HMF 2.2e-17 CL0012