Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1410 ATGGTTTCAACGAGACGCAGTGGATCTCTCTCTGGCAACAATACCAAAAGATCTTCCTCTTCGGAAGATAAACCTCCCTCGCCAAAACGTCAAAAGGTCGACAATGGTGGTGCGTCGGAGAAACCGATGCCGGCAGCGGAGAATTCTAAAGAAGTGTGTACTCCGGACCCGGCGGCTGATCATGGAGAATGTGGGGCCGGCGATGCTCAGATCGCCGGAGCTGGTGCTGGTGATGGTCTGAGTTCTCGCAAGGGTGAGGCTTCGCCGGCTGTTACTGTGGCGGCTCCGATCGCTGATGGGTCTTCGCCGACTTTGGTGGTTGATAAGCCGAGGGGTTCGTTCACTTCGTGGAGTGTATATCAGAAGCAAAATCCAACTTCCGAGACTTCGACACCCTGGTGCAGGCTCCTGACGCAGTCTGCGCTGCATTCAAATGTCGCCATTTGCACGCCGAACTTCACCATTGGTTCCAGTAGAAATTGCAACTTCCCATTGAAGGATCAGACTATAAGTGGAAATTTATGCAAGATCAAGCATACCCAGCGGGAGGGAAATGCTGTAGCTGTGCTAGAAAGTACTGGTAGCAAAGGATCTGTGCTAGTAAATGGGACGCTTGTCAAGAAGAATACCAGTTGTGTTCTTAACTCGGGTGATGAGGTGATTTTTCAGCAACTAAATAACGAGGTTGCAGTTAAGGGTGCAGAAGTTCAGAGTGGTGTTGGGAAGTTTTTGCAGCTTGAAAGGAAATCTGGAGACCCATCTGCTGTGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAGCCTCAGAAAGGATCTTTCAAGATGGAAATCTCCATCTCAGACCACCAATAAAGCTCTCCAGGGTGCTGACATTTCTACTCATTCCGTTATTGATGATGGTACAGAAACTGAGCTTGATGGCCTAGAAGGCAACTCAGCTCCAACTTTAGGGAGTGATAAAGCAGCTGATGTTGGAGCAAGTGACAAGAATTCTCCGATGGATTGCGATCCAGATGCTGGCACAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTCCTAAGGCCTTACTTCAGGATCTTAGCTCGATCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAGAAATGGGACGAGGGATACGCAGGCAGCGTCGACTTCGGGTATGTCTATGCGCAGTGAGGTGTTTAAAGAAGATGTTCGTGCTGCAATACTGGATGGAAGAGAAATAGAAGTGTCATTTGACAACTTCCCATACTATTTAAGTGAGAACACAAAAAATGTCTTGGTTGCAGCTTGCTTTATACATCTGAGGCATAAAGAACATGCAAAATTCACAACGGATCTTACGACCTTAAACCCTCGCATCTTGCTTTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAGGCACTTGCCAATTACTTTAGAGCTAAATTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCATCCAAGGAAGCCGAGCTACTCAAAGATGGATCCAATGCTGAAAAATCCTGCATCTGCACCAAGTTAAGTCTTACAGCCACAGGCATGGGTAGTGAAACAGATACACCTAGCTCTTTAAATGCACCTACTTCAGATGGCCTTGAATCTCAACCTAAGTTGGAGACTGATACTGTACCCTCTACCTCTGGGACAGCTAGAAATTGCTTGTTTAAACTAGGTATCTGTTCTTCTGCATTTCTTCCATCTTTAAGAAGCTTTGATCTCAATGTGTCGTTGGTATTCTCCATATATAATCATGCAGGTGACAGGGTAAAGTTTAGTTGTTTATCTTCTGGTGGCTTGTATCAGACTTCTTCTTCAAGGGGCCCACCTAATGGAAGCAGGGGGAAGGTTGTCTTACATTTTGATGATAATCCTTTGTCAAAAGTTGGTGTAAGATTCGATAAACCCATACTTGATGGAGTTGATCTAGGAGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGGTAATATCATGTTGGTTGTGCTTAGTGAGAGCAGAAGTGCACCTTTCATTTTGTTTATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGTGATCCATATTCATTCAAAAGTAGACTTGAAAAGCTTCCAGCCAATGTGGTTGTAATAGGTTCACACACTCATGCTGACAGTCGGAAGGAGAAGTCGCATCCTGGGGGTTTGCTTTTTACGAAGTTTGGCAGTAATCAGACTGCCCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGATTGCATGACCGGGGGAAAGAAGTGCCAAAGCCAAATAAGACTTTGACTAAGCTTTTTCCAAATAAAGTAACAATTCACATGCCGCAGGATGAGGCACTTCTTGCATCTTGGAAGCAGCAACTGGATCGAGATGCTGAGACTCTCAAAATCAAAGGAAATTTGCATTACCTGTGCATGGCTTTGGGACGTTGTGGGATAGAATGTGAAGGATTAGAGACCTTGTGCACAAAGGACCTGTCACTTACAAATGAAAATACTGAGAAGATAGTTGGTTGGGCTTTGAGTCACCACCTAATGCAGAATCCAGAGGCAGATCCTGATGCAAAGCTTGTATTGTCTTGTGAGAGCATCCAGTATGGAATTGGGATCTTGACTGCCATTCAGAACGAGTCCAAGAGCTTGAAGAAGTCTCTTAAGGATGTTGTTACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCTCCTAGTGACATTGGTGTTACTTTTGATGATATTGGAGCACTTGAAAATGTCAAGGATACGTTGAAGGAGTTAGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAGGGGGCAGTTAACAAAGCCTTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACAGGCAAGACAATGCTTGCTAAGGCAGTTGCTACAGAAGCTGGTGCAAACTTTATCAACATTTCCATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTTGCCAGCAAAATTGCCCCTAGTGTTATATTTGTTGATGAAGTTGACAGCATGTTGGGCCGGAGAGAAAATCCAGGGGAGCATGAAGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGCTTGCGTACAAAGGACACAGAGCGAGTTCTTGTACTAGCAGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTTATCCGGAGGCTGCCACGAAGGTTGATGGTAAATCTGCCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTGGCAGAAGAGGACTTGTCACCTGGTGTTGATTTTGATGCAATTGCAAGTATGACTGAAGGATATTCTGGAAGTGATCTTAAGAATCTGTGTGTAACTGCTGCGCACCGTCCAATTAAGGAGATATTGGAAAAGGAAAAAAAGGAGCGCACTGCTGCTCTAGCGGAAGGTAGACCTGCTCCAGCATTGAGTGGAAGTGCTGATATTCGATCTTTAAACATGGAAGACTTCAAATATGCTCATGAACGGGTATGTGCAAGTGTATCCTCTGAATCCGTAAATATGACCGAGCTTTTACAATGGAATGAGCTATATGGCGAAGGTGGTTCAAGAAGAAAGAAAGCGCTCAGCTATTTCATGTGA 3702 0.4435 MVSTRRSGSLSGNNTKRSSSSEDKPPSPKRQKVDNGGASEKPMPAAENSKEVCTPDPAADHGECGAGDAQIAGAGAGDGLSSRKGEASPAVTVAAPIADGSSPTLVVDKPRGSFTSWSVYQKQNPTSETSTPWCRLLTQSALHSNVAICTPNFTIGSSRNCNFPLKDQTISGNLCKIKHTQREGNAVAVLESTGSKGSVLVNGTLVKKNTSCVLNSGDEVIFQQLNNEVAVKGAEVQSGVGKFLQLERKSGDPSAVAGASILASLSSLRKDLSRWKSPSQTTNKALQGADISTHSVIDDGTETELDGLEGNSAPTLGSDKAADVGASDKNSPMDCDPDAGTEAGNVKLSGVNDFLRPYFRILARSSCKLKLSKSICKQVLEERNGTRDTQAASTSGMSMRSEVFKEDVRAAILDGREIEVSFDNFPYYLSENTKNVLVAACFIHLRHKEHAKFTTDLTTLNPRILLSGPAGSEIYQEMLAKALANYFRAKLLIFDSHLLLGGLSSKEAELLKDGSNAEKSCICTKLSLTATGMGSETDTPSSLNAPTSDGLESQPKLETDTVPSTSGTARNCLFKLGICSSAFLPSLRSFDLNVSLVFSIYNHAGDRVKFSCLSSGGLYQTSSSRGPPNGSRGKVVLHFDDNPLSKVGVRFDKPILDGVDLGGACEGGQGFFCNGNIMLVVLSESRSAPFILFMKDAEKSIVGNGDPYSFKSRLEKLPANVVVIGSHTHADSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDAETLKIKGNLHYLCMALGRCGIECEGLETLCTKDLSLTNENTEKIVGWALSHHLMQNPEADPDAKLVLSCESIQYGIGILTAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCRGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAEEDLSPGVDFDAIASMTEGYSGSDLKNLCVTAAHRPIKEILEKEKKERTAALAEGRPAPALSGSADIRSLNMEDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1410 1233 Pfam AAA+ lid domain 1123 1157 IPR041569 -
Glsi13g1410 1233 Gene3D - 927 1208 IPR027417 -
Glsi13g1410 1233 CDD FHA 153 222 - -
Glsi13g1410 1233 SMART AAA_5 965 1102 IPR003593 GO:0016887
Glsi13g1410 1233 MobiDBLite consensus disorder prediction 274 342 - -
Glsi13g1410 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 928 1209 IPR027417 -
Glsi13g1410 1233 MobiDBLite consensus disorder prediction 274 298 - -
Glsi13g1410 1233 MobiDBLite consensus disorder prediction 22 36 - -
Glsi13g1410 1233 MobiDBLite consensus disorder prediction 1 21 - -
Glsi13g1410 1233 ProSitePatterns AAA-protein family signature. 1072 1091 IPR003960 GO:0005524|GO:0016887
Glsi13g1410 1233 SUPERFAMILY SMAD/FHA domain 131 230 IPR008984 GO:0005515
Glsi13g1410 1233 CDD RecA-like_ATAD1 932 1098 - -
Glsi13g1410 1233 Gene3D - 1101 1195 - -
Glsi13g1410 1233 Gene3D - 132 237 - -
Glsi13g1410 1233 MobiDBLite consensus disorder prediction 532 564 - -
Glsi13g1410 1233 MobiDBLite consensus disorder prediction 1 70 - -
Glsi13g1410 1233 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 403 1232 - -
Glsi13g1410 1233 Pfam ATPase family associated with various cellular activities (AAA) 969 1098 IPR003959 GO:0005524|GO:0016887
Glsi13g1410 1233 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 927 1103 - -
Glsi13g1410 1233 Pfam FHA domain 154 222 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1410 Glsi-ChrGlsi13 31130044 31139709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1410 928 1180 Calmodulin-binding Proteins AT3G56690 39.231 1.23e-40 161