Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1405 ATGAAACCCAAATGCAAACTGTTGTGTGCAGAATTTCGTAGTAATGGTTGCACTGCCAATTACCTGATCAGATCAGTGTTGTGTTCGTGGCCTGTTTATTGTTTTACTGAAAGTGATTTCAATTTGCTTGTATCTGGATGTGCTATAGCTTCAACCAAGTTGCTTGATGATAAGAGAGATATTTCTGAACCTCAAAGAAGCCGTTCCACACCCTTTCCCGCTCCGAGTTCGAGCGGAGTCTATGCCCTAACCAACACGAGGATTTGCGGGGTTTTTCTTGCTCAAGTTCGAGTCTTTGAGCACTCTGAATACCTGCAATCAGATTGTTGTTGGGATTTCTTCTCTCTTCTATTAGTTGTGCTTGTACTTTTGTGGACTAAAGCTGTACCATATAGAATGGCTACTACTTGTGGTTCTTTTTCATTGTGCCCGTACAGCTTGTATCAACGCTCATACCCAAGAATGTGTTCCATTTCGTGCTCGGTTGGCTCTTCTGCTACCTTAGGTAATGATGGATCTAAAGTGCCCGGCAAAAGATCAAGAAGAATTGAAGGACCCAGAAAAAGCATGGAAGACTCTGTGCAACGCAGGATGGAGCAATTTTATGAAGGATCTGATGGACCGCCCCTCCGGGTTCTTCCTATTGGTGGGCTGGGTGAAATTGGAATGAATTGCATGCTGGTTGGGAACCATGATCGCTATATCCTCATTGATGCTGGTGTCATGTTTCCTGATTATGATGAGCTTGGAGTCCAAAAGATCATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAGGCACTTGTTATAACACATGGTCATGAAGATCATATTGGTGCGCTGCCTTGGTGTACTTCCTTTGGATATGCCTTGTTGGTTTCCGTGCATGGGAAGATGATATGTTTTCAAAATGTTATCACCTTCAAAGCTGTGAATGTGGGCAGCAACCTTAACTCAGATGCTGGTATTAAGCAGCCTGCCATTCTTCTTTCTAGTTTTCAGAGACTGAAAGTATTTAGAACAAGGAAGAAGTTTATGGCAGGGCCATTTGAAATAGAGCCTATCAGGGTGACACATTCTATTCCTGATTGTTGTGGTTTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACAGGGGACTGGAAGATTGATGAAACACCGTTAGATGGGAAAGTTTTTGACCGTGAAGCTTTAGAGGAACTCTCCAAGGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTGGTGGCAGATGCATTATTGAGGCATATTTCAGCAGCAAAAGGTAGGGTTATTACTACCCAATTTGCGTCAAATATACATCGACTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGAAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACATATTTGGATGCAGCTTGGAAGGATGGACAGGCGCCAATTGATCCATCCACTCTGGTGAAAGTGGAAGATATTGATGCTTATGCTCCAAAGGATCTACTAATTGTAACAACTGGCTCTCAAGCAGAACCACGTGCTGCCTTGAATCTTGCATCTTATGGAAGCAGTCATTATTTCAAGCTGACCAAGGAAGATGTAATTTTGTATTCAGCTAAGGTTATTCCTGGTAATGAGTCTCGGGTGATGAAAATGCTAAACCGCGTATCTGAGATTGGATCATCAATAGTTATGGGGAAGAATGAGGGGCTGCACACATCTGGTCATGGGTACCGAGGAGAATTGGAGGAAGTGCTTAGAATAGTGAAGCCACAACATTTTCTTCCCATACATGGGGAACTTGTGTTCTTGAAGGAGCATGAGTTGCTTGGAAAATCATCTGGCATTCGACACACTGCCGTTATTAAGAATGGAGAAATGCTTGGTGTTTCACATTTGAGAAATAGAAGGGTCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAGTATAGTGATGGGGATAAAGCATTTGGTACATCAAGCGAACTATTTATTGATGAAAGATTGAGAATTGCATTAGACGGGATTATTGTGATCAGCATGGAAATATTTCGCCCTCAAAATTTAGAGAGTCTTGTCAAAAATACCTTAAAAGGGAAGATAAGGATTACCACAAGATGCCTTTGGCTTGACAAAGGGAAGCTTTTGGATGCACTTCATAAAGCTGCTCATGCTGCACTTTCAAGCTGCCCTGTAAACTGTCCACTAGCTCACATTGAAAGAACTGTATCTGAGGTATTGAGGAAGATGGTGAGGAAGTACAGTGGCAAACGCCCTGAAGTTATTGCCTATGCCATAGAAAATCCTGCAGCTGTTCTCACTGATGAGATAAGCACAAGGCTGTCTGGCAAATCCCATGCGGTTCTTGGAATATCATCATTGAGAAAAGCTGTGAATGGATGTGTGAAGGAAAATCAGTCCACTAAAATGCAAATAAAAGGAGCTGGTGCGGATGATGAAATTGATGCTGAAAGACTACTACCTGAGGAAGACATCACTACTTCAAGTGGAGCTGAGGGAGATCACTCTGAGTCAGAGGATTTGGATGAATTTTGGAAACCATTCATTGCATCCTCACCCGTCAAGAAGTCAAAGCATTATGTTCCACAAAAGGAGCCTAAGTTCCAGCTGAAGAAAGATGGTTCTGAAGACTCTGAAGAAGGCAAGTCTGAAAAGATATCAAGTTCTGAACCCAAAGCTTCAAAGCCAGTGAAGAGAAACAAATGGAAACCTGAGGAAGTTAAGAAGCTGATTGTTTTGCGTGGGGAGCTGCATGACAGATTTCAGATTGTGAAGGGAAGAATGGCCCTCTGGGAAGAGATATCTCAAAATTTGTTGGTTGAAGGGGTCAACAGAAGTCCAGGGCAGTGTAAATCGCACTGGACATCTTTGGTGCAGAAATATGAGGAGATCAAGACTGGAAAGAGAAGCGAGATAAGTTGGCCATATCTTGAGGACATGGACAGGATTCTATCTGATAATGAGGCTCTGGCAACAAAATGA 3057 0.422 MKPKCKLLCAEFRSNGCTANYLIRSVLCSWPVYCFTESDFNLLVSGCAIASTKLLDDKRDISEPQRSRSTPFPAPSSSGVYALTNTRICGVFLAQVRVFEHSEYLQSDCCWDFFSLLLVVLVLLWTKAVPYRMATTCGSFSLCPYSLYQRSYPRMCSISCSVGSSATLGNDGSKVPGKRSRRIEGPRKSMEDSVQRRMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWCTSFGYALLVSVHGKMICFQNVITFKAVNVGSNLNSDAGIKQPAILLSSFQRLKVFRTRKKFMAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGQAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHYFKLTKEDVILYSAKVIPGNESRVMKMLNRVSEIGSSIVMGKNEGLHTSGHGYRGELEEVLRIVKPQHFLPIHGELVFLKEHELLGKSSGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLRIALDGIIVISMEIFRPQNLESLVKNTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHIERTVSEVLRKMVRKYSGKRPEVIAYAIENPAAVLTDEISTRLSGKSHAVLGISSLRKAVNGCVKENQSTKMQIKGAGADDEIDAERLLPEEDITTSSGAEGDHSESEDLDEFWKPFIASSPVKKSKHYVPQKEPKFQLKKDGSEDSEEGKSEKISSSEPKASKPVKRNKWKPEEVKKLIVLRGELHDRFQIVKGRMALWEEISQNLLVEGVNRSPGQCKSHWTSLVQKYEEIKTGKRSEISWPYLEDMDRILSDNEALATK 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1405 1018 CDD GT1 925 990 - -
Glsi13g1405 1018 ProSiteProfiles Myb-like domain profile. 919 983 IPR001005 -
Glsi13g1405 1018 Pfam Metallo-beta-lactamase superfamily 223 286 IPR001279 -
Glsi13g1405 1018 MobiDBLite consensus disorder prediction 167 189 - -
Glsi13g1405 1018 Pfam Myb/SANT-like DNA-binding domain 924 1008 IPR044822 -
Glsi13g1405 1018 CDD RNaseJ_MBL-fold 213 641 - -
Glsi13g1405 1018 Gene3D - 214 643 IPR036866 -
Glsi13g1405 1018 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 584 629 IPR011108 -
Glsi13g1405 1018 PANTHER RIBONUCLEASE J 126 1018 - -
Glsi13g1405 1018 MobiDBLite consensus disorder prediction 883 925 - -
Glsi13g1405 1018 Gene3D - 428 578 IPR042173 -
Glsi13g1405 1018 SMART Lactamase_B_5a 222 436 IPR001279 -
Glsi13g1405 1018 MobiDBLite consensus disorder prediction 881 925 - -
Glsi13g1405 1018 Gene3D - 927 988 - -
Glsi13g1405 1018 SMART sant 923 985 IPR001005 -
Glsi13g1405 1018 SUPERFAMILY Metallo-hydrolase/oxidoreductase 210 641 IPR036866 -
Glsi13g1405 1018 MobiDBLite consensus disorder prediction 175 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1405 Glsi-ChrGlsi13 31097505 31108812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1405 912 1010 Trihelix Transcription Factor Family AT2G38250 33.333 5.28e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi13g1405 Myb_DNA-bind_4 3.2e-16 CL0123