Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1399 ATGGCGAACCAATGCCAAACAAAGCCTAAGCTCGCATTCGACCCAAACAGTGGCTTTTGCCCTGTGACTAAAATTGTTCATAGTCTCCGTCCGCTTGTCCCACTCCCTCCTCCCTCTCAACCTCTCTCTATCACTGACTACATACTCTCCCTCCTCCTCGCCACTGCTTCCACCTCCACCACCACTTTTCTCATTGACTCCGCCACTAACCGCCATGTGTCCTACTCTATCTTCCATCAGCAAATCAAAAACCTCGCTTCCTCCCTCCTTTCCCTCACCCCTCTTTCCAAAGGCCATGTTGCCTTCATTCTGGCCCCTGCTTCCCTGCATATCCCCCTTCTCTACTTCTCCCTCTTGTCTTTGGGAGTCACCATCTCACCCGCTAACCCACTCGGTTCTGACTCCGAGGTGGCTCACCAGGTTGGAGTCAGTCAACCTATCATCGCCTTCGCCACCTCCTCTACTGCCCACAAGATCCCCAAGCTCCAATACGGTACCATACTCATCGACTCGCCTCTGTTCCTTTCCATGATCAATGGATCTGGCGGAAGTGATAGCAGAAGCGTCAACAGAGTTCAGATAAGTCAATCTGACTCGGCGGCGATTCTCTTCTCTTCCGGAACCACTGGTCTAGTCAAGGGAGTTTTGTTGACTCACAGGAATCTAATCTCATTCATTGGTGGCATTTATCACATGAGGCGCCTGATCGATCAAAATGGGAATGAGCCACGCCGTGTATCTTTGCTCCCATTGCCACTGTTTCATGTCTACGGCTTTTCCGTGGTTGTTAGGGTCGTAGCAATGGGAGAGACATTGGTTTTGATGCAAAGATTCGATTTTGAAGGGATGTTAAAGGCAGTAGAGAGGTACAAGATTACACATATGCCAGTGTCGCCACCGCTTGTGGTGGCGTTGGTTAAGTCGGAGTTAGCCAAAAAGCACGACCTTAGCTCGCTTCGAGTGCTCGGGTGCGGTGGCGCGCCGCTTGGCAAGGAGTTAGCGGAGAACTTCAAAGTGAAATTCCCCAATGTCGAAATTGCGCAGGGCTATGGTTTGACTGAGAGTGCAGCTGCAGTTACCGAAATGATAGGGGCTGACGAGTATAAGCACCATGGTTCTGTGGGTCGACTAGCAGGAAATATGGAAGCCAAGATAGTGGATCCTGTATCTGGAGAGGAATTACCTCCTGGCCAGAAAGGGGAGCTATGGTTGCGAGGTCCTACAATAATGAAAGGCTATGTAGGAGATGAAAAGGCAACCGCGGAAACATTGGTTTCAGAAGGATGGCTGAAGACTGGCGATCTTTGTTATTTTGACTCTGATGGCTTCCTCTTCATTGTAGATAGGCTAAAGGAATTGATTAAATACAAAGCATACCAGGTTCCCCCAGCCGAGTTGGAACGTTTACTTCTCTCCAATCCTGAAATTGCTGATGCTGCAGTAATTCCATACCCCGATGAAGATGCAGGGCAGATTCCAATGGCCTTTGTGGTAAGAAAGCCTGGAAGCACTATTACTGCAGGTGTGATCATGGATTTTGTGGCGAAGCAGGTTGCACCGTACAAGAAGATAAGGCGTGTATCTTTTATAAACTCGATCCCAAAATCTCCTGCAGGCAAAATATTGAGAAGGGAAATAGCTAGTTATGCTCTATCTAGTGGTTCCTCCAAATTGTGA 1677 0.4884 MANQCQTKPKLAFDPNSGFCPVTKIVHSLRPLVPLPPPSQPLSITDYILSLLLATASTSTTTFLIDSATNRHVSYSIFHQQIKNLASSLLSLTPLSKGHVAFILAPASLHIPLLYFSLLSLGVTISPANPLGSDSEVAHQVGVSQPIIAFATSSTAHKIPKLQYGTILIDSPLFLSMINGSGGSDSRSVNRVQISQSDSAAILFSSGTTGLVKGVLLTHRNLISFIGGIYHMRRLIDQNGNEPRRVSLLPLPLFHVYGFSVVVRVVAMGETLVLMQRFDFEGMLKAVERYKITHMPVSPPLVVALVKSELAKKHDLSSLRVLGCGGAPLGKELAENFKVKFPNVEIAQGYGLTESAAAVTEMIGADEYKHHGSVGRLAGNMEAKIVDPVSGEELPPGQKGELWLRGPTIMKGYVGDEKATAETLVSEGWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPPAELERLLLSNPEIADAAVIPYPDEDAGQIPMAFVVRKPGSTITAGVIMDFVAKQVAPYKKIRRVSFINSIPKSPAGKILRREIASYALSSGSSKL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1399 558 Pfam AMP-binding enzyme 58 456 IPR000873 -
Glsi13g1399 558 Gene3D - 452 552 IPR045851 -
Glsi13g1399 558 Pfam AMP-binding enzyme C-terminal domain 465 540 IPR025110 -
Glsi13g1399 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 547 - -
Glsi13g1399 558 FunFam 4-coumarate--CoA ligase 2 452 553 - -
Glsi13g1399 558 Gene3D - 34 451 IPR042099 -
Glsi13g1399 558 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Glsi13g1399 558 CDD 4CL 65 545 - -
Glsi13g1399 558 SUPERFAMILY Acetyl-CoA synthetase-like 56 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1399 Glsi-ChrGlsi13 31068899 31072124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1399 5 558 Monolignol Biosynthesis Gene Families AT5G63380 60.247 0.0 675