Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1398 ATGTTCTCGTTATGGCCTTTGAAATCACATGCAGATAGTGCACTACAACTCTGGGCAACCAATGTTGAGCATACGACGAAGCCGCCCGTTTTCATTTCGTGGAAGTCCCTGGCAGAGGAAAGGGCTGTAGGTGATGGCACAGTGTTTGAACATAATCAAATCTCTATAGTGAAGACTGTGTCTGTCCAAGAGGCCGCACTACCATCCATGGCCAATGCCATCGACCCTAACAGCGGCTTTTGCCCTCTAACTAAAACCTTCCATAGTCTCCGTCCACATGTCCCTCTCCCTCCTCCCTCTCAACCTTTCTCCATCGCTGACTACGCACTCTCTCTCATCCCCCCCAACGCTTCCTCCACCACTGCTCTCATTGACTCCGCCACCGACCGCCATCTCTCCTACTCTCTCTTCCTTCACCAAATCAAAAACCTCGCTTCCTCCCTCCTTTCCCTCACCCCTCTTTCCAAAGGCCATGTTGCCTTCATTCTCTCCCCTGCTTCTTTGCATATCCCCGTTCTCTACTACTCCCTCTTGTCTTTGGGAGTCACCATCTCGCCCGCTAACCCACTCGGTTCTGACTCTGAGGTGCTTCACCAGGTTGAACTCGGTAAACCTGTCATCGCCTTCGCCACCTCCTCCACTGCCCGCAAGATTCCCAAGCTTCAATTCGGTACCATACTCATCGACTCCCCTGAGTTCCTTTCCATGATCAATGGACCTGGCGCAAGTAATTATAGGAGCATTGACAGGGTTCATATAAATCAATCTGATCCTGCGGCTATTCTCTTCTCTTCCGGAACCACCGGCCGAGTGAAGGGTGTGTTATTGACTCACAGGAATTTAATCGCATTGATAGGGGGCTTTTATCACCTGAGGCATCTGATCAATCCGGAAGAAAATGAACGAGACCCAGTATCCCTGTTTACACTGCCCCTTTTCCATGTGTTTGGCTTTTTCATGCTAATTAGGGCCATATCTATGGGGGAGACCTTGGTTTTGATGCAAAGGTTCGATTTTGAAGGGATGTTAAAAGCTGTAGAGAGGTACAAGATTACGTACATGCCAGTTTCGCCACCGCTTGTGGTGGCACTGGCTAAGTCGGAATTAATGAACAAGTACGACCTTAGCTCGCTTCGGTTGTTGGGGTGCGGTGGCGCGCCGCTTGGTAGGGAGGTAGCCGAGAACTTCAATGCGAAATTCCCCAACGTGGAAATTGTGCAGGGCTATGGTCTGACTGAAAGTGGAGGAGGGGCAACGAGAATGATAGGGCCTGAGGAGGCCAAGCGCCATGGTTCTGTGGGTCGACTAGCGGAAAATATGGAAGCCAAGATAGTGGATCCTGTGAGTGGAGAGGCTTTACCCCCTGGCCAGAAAGGGGAGCTGTGGTTGAGAGGTCCAACAATAATGAAAGGTTATGTGAGAAATGACAAGGCAACGGCTGAAACATTGGATTCAGAGGGATGGCTCAAGACAGGTGATCTTTGTTATTTTGACTCTGATGGGTTCCTATACATTGTAGACAGGCTGAAAGAATTGATCAAATACAAAGCATATCAGGTTCCTCCAGCTGAATTGGAACATTTACTTCACACCAATCCTGAAATTGCTGATGCTGCCGTAGTTCCGTACCCTGATGAGGATGCAGGGCAAATTCCAATGGCCTTTGTGGTAAGACAGCCTGGAAGCAATATCAGTGCAGATAATGTCATGGATTTTGTGGCAAAGCAGGTTGCACCATACAAGAAGATACGGCGTGTATCTTTTGTGAACAGTATCCCAAAATCTGCAGCTGGCAAAATATTAAGAAGAGAATTAGTTGATTATGCTCTAAATAGTGGTTCATCTAAATTGTGA 1854 0.4844 MFSLWPLKSHADSALQLWATNVEHTTKPPVFISWKSLAEERAVGDGTVFEHNQISIVKTVSVQEAALPSMANAIDPNSGFCPLTKTFHSLRPHVPLPPPSQPFSIADYALSLIPPNASSTTALIDSATDRHLSYSLFLHQIKNLASSLLSLTPLSKGHVAFILSPASLHIPVLYYSLLSLGVTISPANPLGSDSEVLHQVELGKPVIAFATSSTARKIPKLQFGTILIDSPEFLSMINGPGASNYRSIDRVHINQSDPAAILFSSGTTGRVKGVLLTHRNLIALIGGFYHLRHLINPEENERDPVSLFTLPLFHVFGFFMLIRAISMGETLVLMQRFDFEGMLKAVERYKITYMPVSPPLVVALAKSELMNKYDLSSLRLLGCGGAPLGREVAENFNAKFPNVEIVQGYGLTESGGGATRMIGPEEAKRHGSVGRLAENMEAKIVDPVSGEALPPGQKGELWLRGPTIMKGYVRNDKATAETLDSEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLHTNPEIADAAVVPYPDEDAGQIPMAFVVRQPGSNISADNVMDFVAKQVAPYKKIRRVSFVNSIPKSAAGKILRRELVDYALNSGSSKL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1398 617 Gene3D - 92 510 IPR042099 -
Glsi13g1398 617 Gene3D - 511 611 IPR045851 -
Glsi13g1398 617 SUPERFAMILY Acetyl-CoA synthetase-like 118 611 - -
Glsi13g1398 617 ProSitePatterns Putative AMP-binding domain signature. 261 272 IPR020845 -
Glsi13g1398 617 FunFam 4-coumarate--CoA ligase 2 511 612 - -
Glsi13g1398 617 CDD 4CL 97 605 - -
Glsi13g1398 617 Pfam AMP-binding enzyme 119 515 IPR000873 -
Glsi13g1398 617 Pfam AMP-binding enzyme C-terminal domain 524 599 IPR025110 -
Glsi13g1398 617 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 81 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1398 Glsi-ChrGlsi13 31058114 31063552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1398 74 617 Monolignol Biosynthesis Gene Families AT5G63380 63.669 0.0 709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1303 14 14019080 14020576 Glsi13g1398 13 31058114 31063552 CCT
Glsi13g1398 13 31058114 31063552 Glsi13g1398 13 31058114 31063552 ECH