Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1381 ATGGCGGCTGCGGCGGTGGCCGAGCCAAGGAAAACCCCTCGACCGGGTAAGGGCGGGTTTGAAGCTCATGGGCTTACCGAAGAGGAAGCCCGGGTTCGGGCCATTGCTGAGATCGTTAACTCTATGGTGGACCTCTCCCGGAAAGGGCAAAACGTCGACTTAAATGCGCTCAAATCCGCAGCATGCCGCAAGTATGGACTTTCACGTGCACCCAAGCTAGTGGAGATGATCGCTGCGCTACCCGAGTCGGAACGAGAGGCGCTGCTACCTAAGCTTCGAGCCAAACCTGTCCGAACCGCCTCAGGAATAGCCGTCGTGGCTGTCATGTCCAAGCCACACCGTTGCCCTCACATAGCGACCACTGGTAATATATGCGTGTACTGCCCCGGAGGGCCTGACTCGGATTTTGAATACAGTACTCAATCTTACACTGGTTACGAACCAACTAGTATGCGTGCAATTCGGGCAAGGTATAACCCATATGTCCAAGCCAGAAGCAGGATAGATCAGCTTAAGCGTTTGGGTCACAGTGTAGATAAGGTTGAGTTCATCTTAATGGGTGGTACTTTCATGTCACTTCCAGCAGACTATCGTGATTACTTTATAAGGAATCTTCATGATGCTCTATCTGGACACACTTCTGCAAACGTAGAAGAGGCAGTGGCATACTCTGAGCATAGTGCAACAAAGTGTATTGGCATGACTATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGGCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTACAAAGCACCTATGAGGATGTTGCTCGAGACACTAATAGAGGACATACAGTTGCTGCTGTAGCAGATTGTTTTTGCTTGTCAAAAGATGCGGGTTTTAAGGTTGTTGCTCACATGATGCCTGACCTTCCAAATGTTGGTGTTGAGAGGGACTTGGAAAGTTTTCGGGAGTTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATATACCCTACACTTGTAATACGTGGAACTGGCCTTTATGAACTCTGGAAAACTGGCAGGTATAGAAATTATCCACCTGAGCAACTTGTGGACATCATAGCTAGGATCCTTGCTATGGTGCCCCCTTGGACACGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCCCTCGTTACTTCTGGGGTTGAGAAAGGGAATCTAAGGGAGCTAGCTTTAGCTCGGATGGAAGACCTGGGCTTGAAATGTCGTGATGTACGGACCAGAGAAGCTGGAATCCAGGACATACATCACCAAATTAAGCCAGAAGAGGTGGAGCTTGTTCGTCGTGATTATATGGCAAATGAGGGTTGGGAAACATTTCTATCATATGAAGATACACGACAGGATATCCTTGTTGGTTTGCTGCGACTGCGAAAATGTGGCCGAAACACTACTTGTTCTGAGCTTATGGGGAAGTGCTCTATTGTTCGTGAACTTCATGTTTATGGAACTGCTGTACCTGTTCATGGGCGGGATGCTGACAAGCTGCAACACCAGGGTTATGGTACACTTCTAATGGAGGAGGCGGAGCGAATTGCCCGCAGGGAACATAGATCAACCAAAATAGCTGTAATTTCAGGAGTTGGTACACGCCATTATTACAGGAAACTGGGGTATGATCTTGAAGGGCCTTACATGGTGAAATATCTACTGTGA 1692 0.4793 MAAAAVAEPRKTPRPGKGGFEAHGLTEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPESEREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLSKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCSELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARREHRSTKIAVISGVGTRHYYRKLGYDLEGPYMVKYLL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1381 563 PIRSF HAT_Elp3 20 563 IPR034687 -
Glsi13g1381 563 Pfam Acetyltransferase (GNAT) family 415 551 IPR000182 GO:0016747
Glsi13g1381 563 FunFam Elongator complex protein 3 411 563 - -
Glsi13g1381 563 SUPERFAMILY Radical SAM enzymes 135 374 - -
Glsi13g1381 563 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 563 IPR000182 GO:0016747
Glsi13g1381 563 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Glsi13g1381 563 Pfam Radical_SAM C-terminal domain 329 408 IPR032432 -
Glsi13g1381 563 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 18 562 IPR039661 -
Glsi13g1381 563 MobiDBLite consensus disorder prediction 1 24 - -
Glsi13g1381 563 Gene3D - 414 562 - -
Glsi13g1381 563 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 371 558 IPR016181 -
Glsi13g1381 563 Pfam Radical SAM superfamily 123 317 IPR007197 GO:0003824|GO:0051536
Glsi13g1381 563 SFLD Radical SAM 53 562 IPR007197 GO:0003824|GO:0051536
Glsi13g1381 563 SFLD ELP3-like 53 562 IPR034687 -
Glsi13g1381 563 CDD Radical_SAM 112 359 - -
Glsi13g1381 563 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
Glsi13g1381 563 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 50 562 IPR034687 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Glsi13g1381 Radical_SAM 1.7e-16 CL0036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1381 13 30967352 30972100 Glsi13g1381 13 30967352 30972100 ECH