Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1378 ATGTTAGAATACTACCAACTGCTTGATGCAAGGTCTTCTTTCCAAGATTCTCTCAAGGCACTCGAGGCTGACATTCAGCATGCCAATATGCTGGCAGCTTCTATTCCAAGGGGAAAGGGCAGGGCTTGTCTTCAAATGAAATTAGTTTACAATCAATTGGCACCCATCTTTCTGTATTTACTCCGATGGATAGATTGCTCCTGTTCATGTCTACTTTCAAGTTATTTGAATCTTTTCCACATAATTGTGTATAAGGTGCACTCAAATGGAAAGCCAAAAATCTCTTCTCATGGAAGGAAAGCAAGCATGAGGGAGTTCTACAATGTTATATTGCCTTCTCTCCAGCGCCTTCACGGTGATTCAATAGATGCTGATATTACTCAAGAAAAAGGTCGCAACAGCCAGATGGTTGTCAGTAGGAGTATCCAAGATAAGAGAAATCCTTCTGATGTGGACTTGGAGAGAGAAAACGAGTGCGGCATCTGTTTAGAGCATTGCACCAAAATGGTTTTGCCAAACTGCTACCATACAATGTGTATAAATTGCTACCATGACTGGAACACAAGATCAGAATCTTGTCCCTTTTGCCGAGGAAGTTTAAAGAGAGTGAACTCAGAGGATTTGTGGGTTCTGACCTGCAGTAGCGATATGATCGATGTGCAAACTGTTTTTAGAGAAGATATACTACGTCTCTCTCTCTTTATAAACAACCTGCCAAAGGATATCCCAGATGCTCTGTTCTTAATGTATAATGAATACTTGTTTTAA 768 0.4049 MLEYYQLLDARSSFQDSLKALEADIQHANMLAASIPRGKGRACLQMKLVYNQLAPIFLYLLRWIDCSCSCLLSSYLNLFHIIVYKVHSNGKPKISSHGRKASMREFYNVILPSLQRLHGDSIDADITQEKGRNSQMVVSRSIQDKRNPSDVDLERENECGICLEHCTKMVLPNCYHTMCINCYHDWNTRSESCPFCRGSLKRVNSEDLWVLTCSSDMIDVQTVFREDILRLSLFINNLPKDIPDALFLMYNEYLF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1378 255 ProSiteProfiles Zinc finger RING-type profile. 159 197 IPR001841 -
Glsi13g1378 255 Pfam Zinc finger, C3HC4 type (RING finger) 156 202 - -
Glsi13g1378 255 SMART ring_2 159 196 IPR001841 -
Glsi13g1378 255 FunFam RING/U-box superfamily protein 140 206 - -
Glsi13g1378 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 208 IPR013083 -
Glsi13g1378 255 PANTHER RING FINGER PROTEIN 41, 151 12 253 - -
Glsi13g1378 255 ProSitePatterns Zinc finger RING-type signature. 174 183 IPR017907 -
Glsi13g1378 255 SUPERFAMILY RING/U-box 149 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1378 Glsi-ChrGlsi13 30946749 30948309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1378 158 235 C3H Transcription Factor Family AT2G20030 36.471 2.67e-06 46.2