Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1375 ATGGATCCCTCTGAATCTGACTCAACTGCAGTTTCGGACTCCATCAAAGACCCAGAATTGGGCTTTCAGTCAGCTCCTTCTTTCCCTAGTTCCTATCACGATCCTGATAACTCAGATCTCAATCACCGGCCTGAGGTCGATGCACTAGTTGGGGAGCTTCAGAGGAAGTTGGATGTGAAGGATAAGGAAGAAGGAGGCGAGACTGAGAAGCAAGATTCCAAATTTGATGATGCTGAGGAAGTGGGGGCTAAAGTTGGTGCTGAACAATCTGGAAAGGAAGAAGGGTGTGATGAAGATAACTGGAATTGGGATGGAAATGAGAGCAATAGCTGGAACGAGAATGTGAACAACAGTGAGAATGATAAGTTAGGTTTGGATTATTTATTTGTCGGTGATGAAGTGGGGAAGAAGAAGGATGGGGAAACCAGCGGTAGAACTCACCAGCACCCGGTGAGGCCGGAAGCAGAAGATTGTGCATTCTATCTTAGGACTGGAACTTGTAAATTTGGGTCTAATTGCAAGTTTAATCACCCTGTTAGGAAGAAAAACCAGGCTGTTAAGGAGAAGGCAAGAGAGAGAGAAGAAGCAGAAGAAAGATCAGGGCAGACAGAATGCAAGTATTATCTAAAGTCGGGAGGTTGTAAGTTTGGAAAAGCTTGTAAGTTTAACCACACAAGAGGAACATGTTCAGCTGCCCCAATTTTAGAGCTTAACTTTCTTGGCCTGCCTATTCGTTTGGGAGAGAAAGAGTGCCCCTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAATTTAATCATCCTGATCCTACAGCTGTTGGGGGATGTGATCCTCCTTCAGGATATGGTAATGGTGGGGCCATTTCATTGCAAGGTGTATCGCAGCCATCTGTACCCTCCTGGTCTTCTCCCAGAACATTAAATGAAACTGCTTCTTTTGTGCCAATGATGCTTTCGCCTAGTCAAGGGGTTTCTCCCCAAAGTGCTGAATGGAATGGATATCAGGCACCTGTCTACCTATCTGAGAGGAGTATGCATCCACCTTCTACATATGTCATGAACAACCCAGCGATTGAAACAAATATTTATACACATCATCAAAACCAGATGCAGGTTGAAGAGTTCCCAGAAAGGCCTGGTGAACCTGAATGCAGTTACTTCTTAAAAACTGGGCATTGCAAATTTAAATCTAATTGTAGATTTCATCATCCAAAGAGTCGGATTGCAAGACCTCCATGCACCCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAATATCTGCTCGCATTATAGTCGCTATGGAATATGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCTATTGCCGTCAACTATGGCTGGACTTGATCAACAATCCTCCTTCACAAGCTCTGCTACTGTAGAACTGGCTGGGATGGCTGGAAGTGGAGGTGAAAGTGATGCTGCAACAATTCAGCAGTCTGTGTAA 1491 0.4467 MDPSESDSTAVSDSIKDPELGFQSAPSFPSSYHDPDNSDLNHRPEVDALVGELQRKLDVKDKEEGGETEKQDSKFDDAEEVGAKVGAEQSGKEEGCDEDNWNWDGNESNSWNENVNNSENDKLGLDYLFVGDEVGKKKDGETSGRTHQHPVRPEAEDCAFYLRTGTCKFGSNCKFNHPVRKKNQAVKEKAREREEAEERSGQTECKYYLKSGGCKFGKACKFNHTRGTCSAAPILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGGCDPPSGYGNGGAISLQGVSQPSVPSWSSPRTLNETASFVPMMLSPSQGVSPQSAEWNGYQAPVYLSERSMHPPSTYVMNNPAIETNIYTHHQNQMQVEEFPERPGEPECSYFLKTGHCKFKSNCRFHHPKSRIARPPCTLSDKGLPLRPDQNICSHYSRYGICKFGPACKFDHPINLLPSTMAGLDQQSSFTSSATVELAGMAGSGGESDAATIQQSV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1375 496 Gene3D - 337 413 - -
Glsi13g1375 496 Gene3D - 129 188 - -
Glsi13g1375 496 SUPERFAMILY CCCH zinc finger 150 181 IPR036855 GO:0046872
Glsi13g1375 496 SUPERFAMILY CCCH zinc finger 246 272 IPR036855 GO:0046872
Glsi13g1375 496 PANTHER PROTEIN PHOSPHATASE RELATED 27 474 - -
Glsi13g1375 496 MobiDBLite consensus disorder prediction 1 110 - -
Glsi13g1375 496 SUPERFAMILY CCCH zinc finger 386 410 IPR036855 GO:0046872
Glsi13g1375 496 ProSiteProfiles Zinc finger C3H1-type profile. 381 409 IPR000571 GO:0046872
Glsi13g1375 496 SUPERFAMILY CCCH zinc finger 424 452 IPR036855 GO:0046872
Glsi13g1375 496 Coils Coil 179 206 - -
Glsi13g1375 496 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Glsi13g1375 496 SUPERFAMILY CCCH zinc finger 203 227 IPR036855 GO:0046872
Glsi13g1375 496 Gene3D - 189 275 - -
Glsi13g1375 496 SMART c3hfinal6 426 453 IPR000571 GO:0046872
Glsi13g1375 496 SMART c3hfinal6 152 179 IPR000571 GO:0046872
Glsi13g1375 496 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Glsi13g1375 496 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Glsi13g1375 496 SMART c3hfinal6 381 408 IPR000571 GO:0046872
Glsi13g1375 496 Gene3D - 425 474 - -
Glsi13g1375 496 MobiDBLite consensus disorder prediction 36 99 - -
Glsi13g1375 496 ProSiteProfiles Zinc finger C3H1-type profile. 152 180 IPR000571 GO:0046872
Glsi13g1375 496 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Glsi13g1375 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 156 178 IPR000571 GO:0046872
Glsi13g1375 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 271 IPR000571 GO:0046872
Glsi13g1375 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 202 224 IPR000571 GO:0046872
Glsi13g1375 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 429 452 IPR000571 GO:0046872
Glsi13g1375 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 383 408 IPR000571 GO:0046872
Glsi13g1375 496 ProSiteProfiles Zinc finger C3H1-type profile. 426 454 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1375 Glsi-ChrGlsi13 30932493 30936945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1375 377 478 C2H2 Transcription Factor Family AT3G02830 41.748 1.63e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi13g1375 zf-CCCH 9.6e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1375 13 30932493 30936945 Glsi13g1375 13 30932493 30936945 ECH