Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1374 ATGGCAGGTTCAGCAGCACTGGGTTCAGAGCCAAACGCAGAGGTATTTTCATGGCTGAAATCTCTGCCTCTGGCTCCAGAGTACCGCCCAACTTTGGCTGAGTTCCAAGATCCAATTTCATACATTTTTAAGATCGAGAAGGAGGCTTCCAAGTATGGAATCTGCAAAATCGTACCCCCTGTGTCGCCTTCTCCGAAGAAGACAGCAATTGTGAATCTTAATCGCTCCTTGGCGGCCCGAGCTACTTGCTCTGGCTCTTCTTATACGAAATCTCAGCCTACATTCACCACAAGGCAGCAACAGATCGGGTTCTGCCCTCGAAAACCACGGCCCGTGCAGCGTCCTGTTTGGCAGAGTGGCGAAAACTACACGTTTCAGGAATTCGAAGCAAAGGCCAAGGCTTTTGAGAAGAACTACCTCAAAAAATGTGCAAAAAAAGGCGGGCTTTCGCCTCTGGAAATAGAAACGCTTTATTGGAAGGCCACAGTGGATAAACCCTTTTCAGTGGAGTACGCAAACGATATGCCTGGTTCGGCTTTTGTTTCCGTGAATGGGAGAAAATGCAGAGAGGCAGGGGAGGGTGCCACTCTTGGTGAGACTGCATGGAACATGAGGGGTGTGTCAAGGGCAAATGGCTCTTTGTTGAGGTTCATGAAGGAGGAGATTCCAGGTGTTACATCGCCGATGGTGTATGTAGCTATGTTGTTCAGCTGGTTTGCTTGGCACGTAGAGGATCATGACTTGCATAGCTTGAATTACCTGCATATGGGGGCAGGCAAGACGTGGTATGGAGTGCCTAGGGATGCTGCAGTCGCGTTTGAGGAAGTGGTCAGAGTTAATGGTTATGGAGGAGAAATAAACCCTCTTGTGACTTTTGCTATTCTTGGTGAGAAAACCACAGTGATTTCGCCTGAAGTATTTATTAGCGCAGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTCACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGATTTAATTGTGGGGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAACTATCGTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCCTCGCTTTGTGTTCAAGAATTCCTGGAAGAATCAGTGCTGAACCACGAAGTTCTCGACTCAAAGATAGGAGGAAGGGTGAAGGAGAAACCATTATTAAAGAATTATTTGTCCAGGATGTGCTACAGAACAACAATCTGCTTCATGTAATTGGAAAAGGATCTGCCATAGTACTTCTTCCTCGTAGCTCTTCAGACATTTCTGTTTGCTCAAAATTACGGGTTGGATCCCAACAACTCAAATTGAACCCTCGATATTCCCTCAGTGCATGTGATTCTGAAGGAATGAACTCCTCTAAAGGTTTTGTTTCTGATGATCTGGTTTACAACAGGAATCCTGGAATAAGGCAAGTGAAAGGTTTCTATTCAGTAAAAGAAAAGTTTGCTTCATTATGTGAAAGAAACAGGATTTCCTCATTAAGTGTAAATGATAGCATATGCACTTCAAGTTCTAAGACCCTGCCAAGAGACACTGAAAGAGAAACTAATCAAGATGGCTTGTCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATGTTAAGCTTTGCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATACCTTATGTCAGCTAATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCGGGAGTAACTAGCAATAAAATTACTGTTACCCATGGAGATGCAAGTACTTCTGAGCAGAACACCTTTACAGGTCTTGTCAATAATGGTTACACACATCTTCGTACCAGTCATTTTTCAGCCTGTCCTGATAACTTCCTACTGTGGAACAGGAACGCAAATGCTGTGCCTGTAGGCTATTGCCTGGCTCTGCATTGGCATGGGCTTGGTTTATCCTGTTTTGGATGGATGGAAAAGAATGCCCAAGATGGTTTATATGATATTCCTGTTCAATCTGTTGAACGCCAGGTAGAGATTGCAGATCAAGATTACAAGGAGGCTTTAAATACTGAAGGACAAAAAGAAACTACAGCTCTTGGCTTATTGGCTTCAGCATATGGTAATTCTTCTGACTCTGAGGAAGATCAGGTTGACCCAGATATTGGAGGTGATGGTGTTGAATCAAATGTGATCAACCATTCATCAGGAAGTGGATCTCAGAAGGAGATATCTAGTTTGCCTTCTCATTTTCAAGATTCCCGTGCTAATGCAGTCAGGGTTCCTGATCTCTCCTTGATTGGATTTGATAGGGGAAGTAATATTCCGTCAAAGAATATTGCCATTTATGAGGATTATATGCATCAGCGAGTTCAGTGTCAGAATGGGAGTCACCAGACTTCTGACTACTCTGTTAAGTTGAAAGATTATAACATCACTTCAGGGGTTCAATTTAAAAATATGAAGTCAGTACCTCATAACACCTTGAATTGTTCCCAAGATGTTCATGATGCCGAAACATTGATGTTTGGCAAGGCTAGAGTTCCCATTGATAATAAAAATGTTTCGTTGGTGCCACAATCTGATGAAGACTCGTCCAGAATGCATGTCTTCTGTCTAGAACATGCTGCAGAAGTTGAGCAGCAACTTCGACCAATAGGAGGAGCACACATATTGCTCCTCTGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAACTGGGGATTGATTACTTGTGGAAGAATATTGCGTACAGGCATACAACCAAAGAGGATGAGGAGAGGATCCAGTCATCTCTGGATAGTGAGGAAGCTATTCCCGGGAATGGAGACTGGGCTGTAAAGCTGGGAATCAATCTATTTTATAGCGCCAGTCTTAGCCGCTCTCCTCTGTATAGTAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGGTGTAGCTCTCCAGCAAACTCACCCACAGAGCCAAAGGTCTATCAGAGGAGGGCCAACAAGCAGAAAAAGGTAGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGAGTCTGAAGATGGTAACGATGAAAAAAGATTGCACGGGTGGTCATTACCTGATGAGAAAACCGAGAGATCAGAAAGTACTCACAAAACCAATGTTACTAGTAGAAACTTTTGTAGCAAGAGGAAAATGGCTATAGAGGATGGAGGGGCTCGGAAAGCCATTTTTGCTGAGAGAGATGTGGGTTCAGATAATTCATTTGAAGATAAACCCAACCTTCAGCAAAGGAGTCTTAGAAGTAAGCAAGCCAGATATATTGAGAGAGATGATGCAGCTTCAGAAGGGGATTATTCTCCTCTTCAGCATCATAGAAAACCTCTAAGCAAGCAAACAAAGTGCATTGAAAGTGATGCGGTTTCAGATGATTCACTGGATGATAATTCTCATATGCGGCATAGGAGAAATTTTGTTGTCAAGGAAGCTAAATTTTTTGACAATGATGTGGTTTCAGATGATATAATTGACTATGATTCCGATTGGCAGCAGCAGGGTGAGCTAGGCAGCAAGCAAGTCAAAGACGAAGAAGATGCAATTTCAGAGGATTCATTAGGTGGTTTTTCTCTTCAGCTGCGTAGGAAGACTCTAAAAAGCAAGCAAGCCAAATACATTGCTGAAGAAGAAGTAATTTCCAATGATCAAATGGAGGATCATTTTCAGAAGCTGCAAAGGAGGATTCCTAAAAGCAGACAAAACAAAGGTCTTTCTGAGGAAGATTCATTGATATCTGATGACCAACTGGAGGATCATTTTCAGAAGCAGCAAAGGAGGATTCCTAAACGCAGACAAACCAAATGTCTTTCTGAGGAAGATATATTGATATCTGATGACGAACTGGAGCATCACATGCTGAAGCAGCGACAAAGGATTCCCAAAAGCAGGCAAGCCAAATGCCTTGCCGGAGAGGATATTATATCTTATAACCAACTGGAGAACCATTCTCGCAAGTATCAAAGAAGGATTTCTAAAAGCAGGCAAGCCAAATGCCTACTCAAGGAAGATGTATTGTCAGATGACCACTTAGGGAATCACGTTCAGAAGCAGAAAAGGAGTGCTCCTAGGAGCCGGCTAAAAAAACGCATTGATAGAGAAGTTATGGATGACTCAACCGAAGATAATTCTCATATGCTGCATCGAACGCCTAAAAGGAAGCGAGCTAAATACATGGACGAAGATGATATAAAATCAGATGATCAAATGGAGGATGATTCTCATCAGCACAGGAGGATTCTTCGAAGTAAGCAATCTAAATCAGAGACAATTAGGCGAATGAAACAAGCCAACCCTCGCCATGTGAAAAACCACACATCCCAGCCTGTAAAACATGGTGCTCGGCTCCTAGTGAAACCAAAGGCTACTAAGCAAATGAAGCAGTCTACCTTTGTGCGGAATAATCAATCTGATAACTCCAGAGAGTGTAGTTTACACATGGAAGAGGAGGAAGAAGGCGGACCTAGCACACGCCTTCGGAAGAGAGTCCCAAAAGTTCAGGAGTCTGAAGCAAAATCAAAAGAAAAGCAAACCAAAAAGAAAAAGGCAAAGAATGCCCCGACGACTGCGAAGGTTTCGGCCGGCCATTCCAAAGTGAAGGTTGAGGAAGTGGATTACCAGTGTGACTTTGAGGGGTGCACCATGAGTTTTGGGTCAAAACAGGAGCTCGTGTTGCATAAGAGAAATATCTGTCCTGTAAAAGGGTGCGGAAAGAAGTTTTTCTCACACAAATATCTGGTGCAGCACCGTCGAGTTCACATGGATGACCGTCCCCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACTTTCAAGTGGGCCTGGGCTCGTACCGAACATATTCGAGTCCACACCGGTGCTCGTCCTTATGTTTGTGCTGAGCCCGGCTGCGGGCAAACATTTAGGTTTGTGTCTGACTTCAGTCGTCATAAGCGAAAAACTGGTCACTCGGCAAAGAAAAGTCGTTAA 5088 0.4361 MAGSAALGSEPNAEVFSWLKSLPLAPEYRPTLAEFQDPISYIFKIEKEASKYGICKIVPPVSPSPKKTAIVNLNRSLAARATCSGSSYTKSQPTFTTRQQQIGFCPRKPRPVQRPVWQSGENYTFQEFEAKAKAFEKNYLKKCAKKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVSVNGRKCREAGEGATLGETAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVNGYGGEINPLVTFAILGEKTTVISPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYRPMVSHFQLLYDLALALCSRIPGRISAEPRSSRLKDRRKGEGETIIKELFVQDVLQNNNLLHVIGKGSAIVLLPRSSSDISVCSKLRVGSQQLKLNPRYSLSACDSEGMNSSKGFVSDDLVYNRNPGIRQVKGFYSVKEKFASLCERNRISSLSVNDSICTSSSKTLPRDTERETNQDGLSDQRLFSCVTCGMLSFACVAIVQPREPAARYLMSANCSFFNDWVVGSGVTSNKITVTHGDASTSEQNTFTGLVNNGYTHLRTSHFSACPDNFLLWNRNANAVPVGYCLALHWHGLGLSCFGWMEKNAQDGLYDIPVQSVERQVEIADQDYKEALNTEGQKETTALGLLASAYGNSSDSEEDQVDPDIGGDGVESNVINHSSGSGSQKEISSLPSHFQDSRANAVRVPDLSLIGFDRGSNIPSKNIAIYEDYMHQRVQCQNGSHQTSDYSVKLKDYNITSGVQFKNMKSVPHNTLNCSQDVHDAETLMFGKARVPIDNKNVSLVPQSDEDSSRMHVFCLEHAAEVEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIDYLWKNIAYRHTTKEDEERIQSSLDSEEAIPGNGDWAVKLGINLFYSASLSRSPLYSKQMPYNSVIYYAFGCSSPANSPTEPKVYQRRANKQKKVVAGKWCGKVWMSNQVHPLLAKRESEDGNDEKRLHGWSLPDEKTERSESTHKTNVTSRNFCSKRKMAIEDGGARKAIFAERDVGSDNSFEDKPNLQQRSLRSKQARYIERDDAASEGDYSPLQHHRKPLSKQTKCIESDAVSDDSLDDNSHMRHRRNFVVKEAKFFDNDVVSDDIIDYDSDWQQQGELGSKQVKDEEDAISEDSLGGFSLQLRRKTLKSKQAKYIAEEEVISNDQMEDHFQKLQRRIPKSRQNKGLSEEDSLISDDQLEDHFQKQQRRIPKRRQTKCLSEEDILISDDELEHHMLKQRQRIPKSRQAKCLAGEDIISYNQLENHSRKYQRRISKSRQAKCLLKEDVLSDDHLGNHVQKQKRSAPRSRLKKRIDREVMDDSTEDNSHMLHRTPKRKRAKYMDEDDIKSDDQMEDDSHQHRRILRSKQSKSETIRRMKQANPRHVKNHTSQPVKHGARLLVKPKATKQMKQSTFVRNNQSDNSRECSLHMEEEEEGGPSTRLRKRVPKVQESEAKSKEKQTKKKKAKNAPTTAKVSAGHSKVKVEEVDYQCDFEGCTMSFGSKQELVLHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR 1695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1374 1695 ProSitePatterns Zinc finger C2H2 type domain signature. 1635 1657 IPR013087 -
Glsi13g1374 1695 SUPERFAMILY beta-beta-alpha zinc fingers 1643 1687 IPR036236 -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 1497 1515 - -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 1269 1306 - -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 1107 1159 - -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 722 765 - -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 1385 1568 - -
Glsi13g1374 1695 Coils Coil 1351 1371 - -
Glsi13g1374 1695 ProSiteProfiles Zinc finger C2H2 type domain profile. 1603 1632 IPR013087 -
Glsi13g1374 1695 FunFam Probable lysine-specific demethylase ELF6 1660 1689 - -
Glsi13g1374 1695 ProSiteProfiles Zinc finger C2H2 type domain profile. 1663 1694 IPR013087 -
Glsi13g1374 1695 Pfam jmjN domain 26 59 IPR003349 -
Glsi13g1374 1695 ProSitePatterns Zinc finger C2H2 type domain signature. 1665 1689 IPR013087 -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 1045 1075 - -
Glsi13g1374 1695 FunFam Probable lysine-specific demethylase ELF6 1630 1659 - -
Glsi13g1374 1695 SUPERFAMILY Clavaminate synthase-like 214 377 - -
Glsi13g1374 1695 Gene3D Cupin 18 369 - -
Glsi13g1374 1695 SMART JmjN_1 24 65 IPR003349 -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 1126 1159 - -
Glsi13g1374 1695 Coils Coil 1540 1560 - -
Glsi13g1374 1695 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 743 765 - -
Glsi13g1374 1695 Coils Coil 685 705 - -
Glsi13g1374 1695 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 1269 1299 - -
Glsi13g1374 1695 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Glsi13g1374 1695 Gene3D Classic Zinc Finger 1601 1687 - -
Glsi13g1374 1695 SMART cupin_9 196 365 IPR003347 -
Glsi13g1374 1695 SUPERFAMILY beta-beta-alpha zinc fingers 1603 1639 IPR036236 -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 1516 1550 - -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 1045 1081 - -
Glsi13g1374 1695 SMART c2h2final6 1663 1689 IPR013087 -
Glsi13g1374 1695 SMART c2h2final6 1580 1602 IPR013087 -
Glsi13g1374 1695 SMART c2h2final6 1603 1627 IPR013087 -
Glsi13g1374 1695 SMART c2h2final6 1633 1657 IPR013087 -
Glsi13g1374 1695 ProSitePatterns Zinc finger C2H2 type domain signature. 1605 1627 IPR013087 -
Glsi13g1374 1695 MobiDBLite consensus disorder prediction 1401 1470 - -
Glsi13g1374 1695 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Glsi13g1374 1695 Coils Coil 1256 1276 - -
Glsi13g1374 1695 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1629 - -
Glsi13g1374 1695 ProSiteProfiles Zinc finger C2H2 type domain profile. 1633 1662 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1374 Glsi-ChrGlsi13 30920099 30929767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1374 881 982 C2H2 Transcription Factor Family AT5G04240 32.353 2.19e-13 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi13g1374 JmjC 4.1e-35 CL0029