Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1372 ATGCTGAAAATTGCGAGTCACAATGTCGATAATTTGTCTTCATCGCCAAAATCTCCAACATCCTTGCTCGCTGAACATAATATAAAAGCTCCGGCTGGTGGTAAGGCCCAAACTGCTGGAATTGCTGTGAGGCATGTGCGCCGGTCCCACTCTGGAAAGTTAGTGCGGGTAAAGAAAGATGGTGCTGGTGGTAAGGGCACTTGGGGAAAGTTGCTTGATACTGATGGTGTATCTCACATTGACAGGAACGATCCGAACTATGACAGTGGTGAGGAACCCTATCAGCTGGTTGGTTCCACTGTTACTGACCCATTAGATGAATTCAAGAAAGCAGTTGTATCCATCATAGAGGAATATTTCAGCACTGGGGATGTGGAATTGGCTGCATCTGACCTCAGAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAGCGCCTTGTGTCCATGGCCATGGACAGGCATGACAAGGAGAAAGAAATGGCGTCTGTTCTTCTTTCAGCTTTGTATGCTGATGTCATCAGTCCTGCACAGATTAGGGATGGATTTTTTATGCTTATTGAATCTGCTGATGATCTTGCAGTGGACATACTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCCCGTGCAGTCGTTGATGACATCCTTCCTCCAGCCTTTCTTGCCAAGGCAAAGAAGGCACTTCCAAAATCTTCCAAGGGAATTCAGGTAATCCAGACGGCTGAGAAGAGTTATCTCTCAGCTCCACATCATGCAGAATTTGTGGAGAGGCGATGGGGTGGTAGCACTCACATCACTGTTGAAGAAGTGAAGAAGAAGATTGCTGATTTACTGAGAGAATATGTGGATAGTGGTGATACATTTGAGGCCTGTAGGTGTATACGGGAGTTGGGGGTTTCATTCTTCCATCACGAGGTTGTAAAGAGGGCTTTGGTACTTGCGATGGAGGCTCGTTCAGCAGAACCTCTAATGTTGAAGCTACTTAAAGAAGCAGCAGAAGAAGGGCTCATTAGCTCCAGCCAAATGGTTAAAGGGTTTTCTCGTTTGGCAGAAGGCCTGGATGATCTTGCTCTTGATATTCCATCAGCTAAAACCTTGTTTCAGTCATTGGTCCCCAAGGCAATTTCTGAAGGGTGGCTTGATGGTTCATTCATGAAACCCTCTAGTGAAGATGGGGATATTCAAGCTGAAGATGAAAAGGTGAGGAAGTATAAAGGAGAGGCTGTAACAATAATTCACGAGTATTTTCTCTCTGATGACATTCCTGAACTCATTCGGAGTCTTGAAGATCTGGGGGCACCTGAGTATAACCCAATATTTTTGAAGAAGCTAATCACTCTTGCTATGGACAGAAAAAATAGGGAAAAGGAAATGGCATCTGTCTTGCTATCTGCTCTTCATATAGAGATCTTCTCAACTGAGGATATAGTCAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGATACAGCACTGGATATATTGGATGCTTCAAATGAACTAGCTCTTTTTCTAGCTCGGGCTGTGATTGATGATGTATTGGCCCCTCTGAATTTAGAAGAAATTGGCAGCAAGTTAACACCAAAATGCAGTGGGAGTGAAACTGTAAGAATGGCCCGTTCACTCATTGTTGCTCGTCATGCTGGTGAGAGGCTATTGAGATGTTGGGGTGGCGGGACAGGATGGGCAGTGGAGGATGCTAAGGACAAGATCATGAAGCTTTTGGAGGAGTATGAAAGCGGGGGTGTTGTGAGTGAAGCTTGCCAGTGTATTCGTGATCTTGGAATGCCTTTCTTTAACCATGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGATGCTGGATCTGCTGCAGGAATGCTTTAGTGAGGGTCTTATCACCATTAATCAGATGACTAAAGGGTTCACCCGCATCAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAATGCAAAGGAGAAATTTGGTTTCTATTTGGATCATGCCCAGAGAAAGGGCTGGCTCCTTCCATCGTTTGATTCGTCTGCCACAGATGTCCAACTGCCCCAGGCTGCAGCTTCTTGA 2091 0.45 MLKIASHNVDNLSSSPKSPTSLLAEHNIKAPAGGKAQTAGIAVRHVRRSHSGKLVRVKKDGAGGKGTWGKLLDTDGVSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSIIEEYFSTGDVELAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLAKAKKALPKSSKGIQVIQTAEKSYLSAPHHAEFVERRWGGSTHITVEEVKKKIADLLREYVDSGDTFEACRCIRELGVSFFHHEVVKRALVLAMEARSAEPLMLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKTLFQSLVPKAISEGWLDGSFMKPSSEDGDIQAEDEKVRKYKGEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSKLTPKCSGSETVRMARSLIVARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFGFYLDHAQRKGWLLPSFDSSATDVQLPQAAAS 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1372 696 ProSiteProfiles MI domain profile. 107 228 IPR003891 -
Glsi13g1372 696 SUPERFAMILY ARM repeat 268 388 IPR016024 -
Glsi13g1372 696 SUPERFAMILY ARM repeat 403 562 IPR016024 -
Glsi13g1372 696 Gene3D - 396 548 - -
Glsi13g1372 696 Gene3D - 100 248 - -
Glsi13g1372 696 ProSiteProfiles MI domain profile. 405 526 IPR003891 -
Glsi13g1372 696 SUPERFAMILY ARM repeat 105 265 IPR016024 -
Glsi13g1372 696 FunFam programmed cell death protein 4 99 250 - -
Glsi13g1372 696 SUPERFAMILY ARM repeat 565 683 IPR016024 -
Glsi13g1372 696 ProSiteProfiles MI domain profile. 568 687 IPR003891 -
Glsi13g1372 696 MobiDBLite consensus disorder prediction 1 21 - -
Glsi13g1372 696 MobiDBLite consensus disorder prediction 7 21 - -
Glsi13g1372 696 Gene3D - 556 685 - -
Glsi13g1372 696 Gene3D - 258 389 - -
Glsi13g1372 696 Pfam MA3 domain 272 383 IPR003891 -
Glsi13g1372 696 Pfam MA3 domain 407 516 IPR003891 -
Glsi13g1372 696 Pfam MA3 domain 570 677 IPR003891 -
Glsi13g1372 696 Pfam MA3 domain 108 219 IPR003891 -
Glsi13g1372 696 SMART ma3_7 108 219 IPR003891 -
Glsi13g1372 696 SMART ma3_7 406 517 IPR003891 -
Glsi13g1372 696 SMART ma3_7 272 383 IPR003891 -
Glsi13g1372 696 SMART ma3_7 569 678 IPR003891 -
Glsi13g1372 696 ProSiteProfiles MI domain profile. 271 392 IPR003891 -
Glsi13g1372 696 PANTHER PROGRAMMED CELL DEATH 4 15 682 IPR039778 GO:0045892
Glsi13g1372 696 FunFam Programmed cell death protein 4 257 393 - -
Glsi13g1372 696 FunFam programmed cell death protein 4 395 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1372 Glsi-ChrGlsi13 30907914 30910743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1372 572 665 Eukaryotic Initiation Factors Gene Family AT5G57870 32.990 8.94e-10 60.1