Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1370 ATGGTTGCTCGAGACAGCCGATTAAACGGACGTTACAGCTTACTGGGTAGGGCCAAGTGTCGACTACGAGGTTCCCGTGGTGCCATGTCAGCATGTAAGATAATGCTTTCCAAGGCACCTCTTGAATTAAAGCAAGGGACGGACCCGCGAGAGCAAATAAGTCAATATCTTCCCCCGATCACCCACTTTCCCCTCTCACTGATCACTAGCAAAGGGAAGAGCAAAATCATGACCACCACTTCACTCCCTTTGCTCCTCGTTCTCTTCTCTCTTCTCACCCCAACCCTCATTTCCTCGTCGCCCCTTCAAGACCCTGAACTGGTAGTACATGAGGTGAACAGGAAAATCAATGCCTCTGTAGCTAGGAGGAACTTGGGGTACCTCTCTTGTGGAAGCGGCAACCCCATTGACGATTGCTGGAGGTGTGACCCCAATTGGGAGCAGAACAGGCAAAGGCTAGCCGATTGTGCAATTGGGTTCGGCAAGAATGCGGTTGGGGGGAAGGATGGTCAGATTTACGTGGTCACAGACGCCGGTGACGATGACCCCGTCAACCCCAAGCCAGGGACTCTTCGGTACGCCGTGATCCAAGATGAGCCATTGTGGATCATTTTCGCAAGAGACATGGTGATTCAGCTGAAGGAAGAGCTAATCATGAACTCCTTCAAGACCATTGACGGCAGAGGCGCAAGTGTACACATTGCAGGGGGTCCATGCATTACTATCCAATACGTGACCAACGTTATAATCCATGGGATACACATCCACGACTGTAAGCAAGGAGGGAATGCCATGGTGAGGGACTCCCCACGGCATTACGGGTGGAGAACCGTATCGGACGGTGACGGCGTGTCCATCTTTGGTGGAAGCCACATATGGGTGGACCACTGCTCTTTGTCGAATTGCAACGATGGGTTGATCGATGCGATTCATGGGTCCACAGCAATTACCATTTCTAACAATTACATGACACATCACGACAAGGTTATGTTGTTGGGTCACAGCGACTCTTATACCCAAGACACGAACATGCAAGTTACCATAGCTTTCAACCACTTTGGAGAAGGCCTCGTTCAAAGAATGCCAAGATGTAGGCTTGGATATTTCCATGTGGTCAACAATGACTATACGCATTGGGAAATGTATGCCGTTGGCGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAACAGATTTGCTGCGCCCGACGAGAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCGGAGAGTGAATGGAAGAACTGGAACTGGAGGTCAGAAGGGGATTTGATGTTAAACGGCGCGTTTTTCACGGCATCGGGTGCAGGAGCCTCCTCAAGCTATGCAAGGGCTTCTAGCCTAAGTGCAAGGCCATCTTCACTTGTCGGTTCGATCACAGTGGGTGCGGGTACACTTAACTGTAGGAAAGGCTCTCGTTGCTGA 1449 0.5066 MVARDSRLNGRYSLLGRAKCRLRGSRGAMSACKIMLSKAPLELKQGTDPREQISQYLPPITHFPLSLITSKGKSKIMTTTSLPLLLVLFSLLTPTLISSSPLQDPELVVHEVNRKINASVARRNLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAVGGKDGQIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDTNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAVGGSANPTINSQGNRFAAPDERFSKEVTKHEDAPESEWKNWNWRSEGDLMLNGAFFTASGAGASSSYARASSLSARPSSLVGSITVGAGTLNCRKGSRC 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1370 482 Gene3D - 133 475 IPR012334 -
Glsi13g1370 482 SMART amb_all 208 405 IPR002022 -
Glsi13g1370 482 PANTHER PECTATE LYASE 18-RELATED 102 480 IPR045032 GO:0030570
Glsi13g1370 482 FunFam Pectate lyase 133 475 - -
Glsi13g1370 482 PRINTS Pollen allergen Amb family signature 156 173 IPR018082 -
Glsi13g1370 482 PRINTS Pollen allergen Amb family signature 280 301 IPR018082 -
Glsi13g1370 482 PRINTS Pollen allergen Amb family signature 216 232 IPR018082 -
Glsi13g1370 482 PRINTS Pollen allergen Amb family signature 453 476 IPR018082 -
Glsi13g1370 482 PRINTS Pollen allergen Amb family signature 382 401 IPR018082 -
Glsi13g1370 482 PRINTS Pollen allergen Amb family signature 424 448 IPR018082 -
Glsi13g1370 482 PRINTS Pollen allergen Amb family signature 180 205 IPR018082 -
Glsi13g1370 482 PRINTS Pollen allergen Amb family signature 360 379 IPR018082 -
Glsi13g1370 482 SUPERFAMILY Pectin lyase-like 116 476 IPR011050 -
Glsi13g1370 482 Pfam Pectate lyase 217 399 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1370 Glsi-ChrGlsi13 30899751 30903992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1370 56 482 Polysaccharide Lyase AT5G63180 77.494 0.0 691
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1370 13 30899751 30903992 Glsi13g1370 13 30899751 30903992 ECH
Glsi02g0134 02 875909 877374 Glsi13g1370 13 30899751 30903992 ECH