Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1360 ATGTCTCCCGCACGCGCTCTTACTCTTTCTCTCTCTAATTCTTGTAGAATTCTGCCCCCTTTCTCTCTCCTTTTTGATCTAAATAACGAAACCATATCAAACTTCAAGGACATTAATAGAGAAGCCCATACATTGCATAAACTATCTGCGATAATTTGTTTCTTCTCGGTCTCCTCGTTTACGCTAAACCCTTCACCCTTCGTCCCTTCCAAGTTCCACCCCTTATCCTCAACCTCCTCCTCCTCCTTCTTCTTCTTCTATAGGGAGATGTCCGTCACAACTATCACTGCGTTTAAGACCCTGGCAATGGCAGAATCATGCCCTCTCTATTCGGCCTCACTCTTCTTTAACACAGCCAAACATTCCTCTCTCTCAAATTCTTCCAAACCCCTTAAACTTAAGCTATCGGCCTCATGCTCGAACTCTACACTCTTTTTACCATCCCTTTCTCTCGTCAGGAAAACCTACCCTTCCTCTGTACTGACATTTGTAGCTCAGACATCGGATTGGGCTCAACAAGAAGACAACGCAGTGGCCGTGGAAGAAGAAGCCGAACAAGAGAATCCCGGATGGGAAAATCAAGACGTCGACGTTGCCCAAGTTCGCCTTTCAAATTGGGAGCCTGAGGATGAAAGGGCAGTAATTGAGGATGGGGAAGGCGAAGGAGAGAGTGGTGAAGATGGAGATTTTGGGGAGAGGGAATTTGTAGAGCCACCTGAAGATGCAAAAATCTTTGTTGGGAATTTACCTTACGATGTTGATAGTCAAAAATTGGCCATGCTTTTTGAGCAGGCTGGAACGGTGGAAATTGCCGAGGTCATTTATAATAGGGAAACTGACCAAAGTCGTGGGTTCGGATTTGTAACGATGAGTACAGTTGAAGAAGCCGAGAAGGCTGTCGAGAAGTTCAGCCGCTATGATTTAAATGGAAGACAGTTGGCTGTTAATAAGGCTGCTCCAAGAGGTTCACAGTCTGAACGCCCACCTCGTGTGTTTGAACCTGCTTTCAGAGTCTACGTTGGTAACCTGCCATGGGATGTTGATAATGGTCGTCTGGAGCAAATATTCAGTGAACACGGTAAGGTTGAAAATGCTCGAATAGTCTATGACAGAGAGACTGGTCGATCTCGTGGATTTGGCTTTGTCACAATGGCCGCTGAGACTGAAATGAATGATGCCATTGCCGCTCTTGATGGTCAGAGTTTGGATGGGAGAGCAATCAGAGTGAATGTTGCTGAGGAAAGGCCCAGGCGTGGCTCCTTTTGA 1266 0.4621 MSPARALTLSLSNSCRILPPFSLLFDLNNETISNFKDINREAHTLHKLSAIICFFSVSSFTLNPSPFVPSKFHPLSSTSSSSFFFFYREMSVTTITAFKTLAMAESCPLYSASLFFNTAKHSSLSNSSKPLKLKLSASCSNSTLFLPSLSLVRKTYPSSVLTFVAQTSDWAQQEDNAVAVEEEAEQENPGWENQDVDVAQVRLSNWEPEDERAVIEDGEGEGESGEDGDFGEREFVEPPEDAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEKFSRYDLNGRQLAVNKAAPRGSQSERPPRVFEPAFRVYVGNLPWDVDNGRLEQIFSEHGKVENARIVYDRETGRSRGFGFVTMAAETEMNDAIAALDGQSLDGRAIRVNVAEERPRRGSF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1360 421 CDD RRM2_NsCP33_like 337 412 - -
Glsi13g1360 421 FunFam 31 kDa ribonucleoprotein, chloroplastic 165 325 - -
Glsi13g1360 421 MobiDBLite consensus disorder prediction 207 234 - -
Glsi13g1360 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 414 IPR000504 GO:0003723
Glsi13g1360 421 FunFam 31 kDa ribonucleoprotein, chloroplastic 326 420 - -
Glsi13g1360 421 CDD RRM1_PSRP2_like 243 322 - -
Glsi13g1360 421 SMART rrm1_1 337 410 IPR000504 GO:0003723
Glsi13g1360 421 SMART rrm1_1 243 316 IPR000504 GO:0003723
Glsi13g1360 421 SUPERFAMILY RNA-binding domain, RBD 328 419 IPR035979 GO:0003676
Glsi13g1360 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 320 IPR000504 GO:0003723
Glsi13g1360 421 MobiDBLite consensus disorder prediction 212 228 - -
Glsi13g1360 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 313 IPR000504 GO:0003723
Glsi13g1360 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 408 IPR000504 GO:0003723
Glsi13g1360 421 Gene3D - 326 421 IPR012677 -
Glsi13g1360 421 SUPERFAMILY RNA-binding domain, RBD 238 330 IPR035979 GO:0003676
Glsi13g1360 421 Gene3D - 165 325 IPR012677 -
Glsi13g1360 421 PANTHER OS02G0815200 PROTEIN 116 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1360 Glsi-ChrGlsi13 30830017 30835224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1360 240 418 Eukaryotic Initiation Factors Gene Family AT3G16380 34.043 6.78e-21 93.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0617 02 4025043 4027995 Glsi13g1360 13 30830017 30835224 CCT
Glsi02g0617 02 4025043 4027995 Glsi13g1360 13 30830017 30835224 ECH
Glsi13g1360 13 30830017 30835224 Glsi13g1360 13 30830017 30835224 ECH