Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1351 ATGGAGATGGAGCGCGTCTTTGAATTTCCTCATAGTCACATGGATCGGCGCCCAAGAAAGAGGGCGCGTTTGGGCTGGGACATACCGGAGGTTCCGAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGGGAATATTTCAAGCTATGCATCTTCAAGGGGACCCTCAGAACATACCACTAGTTCTCTGTATGTTAAGGGAGTCGCTCAAAATGGTTCTCCCCCATGGCGAGATGATGACAAAGATGGCCATTACATGTTTGCGCTTGGAGAAAATTTAACATCTCGCTATAAGATACATAGCAAAATGGGGGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTCCGTGGGATAAAGAAGTATAGAGAAGCGGCCATGATAGAGATTGAGGTGCTGCAACAGCTTGGAAAACATGATAAAGGTGGTAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATGTCTGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCTATTGATCTTGTTCGGGAGATTGGCAAACAACTGTTGGAATGTGTAGCATTCATGCATGATTTGAAGATGATCCATACGGACTTGAAGCCTGAAAATATACTTCTAGTTTCACCAGAATATGTTAAAGTTCCTGACTACAAGAGTTCATCCAGATCACCAAGTTCCTATGTTAAGAGAGTGCCAAAATCAAGTGCCATAAAGGTCATTGATTTTGGCAGCACCACTTATGAGCGAAAAGATCAGAATTACATTGTATCAACACGTCATTATAGGGCACCTGAAGTTATAATTGGACTTGGATGGAGTTATCCATGCGATATATGGAGTGTAGGATGTATATTGGTTGAGTTATGCACGGGTGAAGCGTTGTTTCAGACTCACGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTGCTTGGTCCATTACCTCAACACATGTTGAAGAGAGTAGACCGACTTGCAGAAAAGTTTGTTAGAAAGGGTAGATTGGACTGGCCCGAGGGTGCAACCTCAAGGGAGAGTATTAAATCTGTAATGAAGCTCGCCCGGCTGCAGAACCTGATAATGCAGCATGTGGATCATTCAGCTGGAGATCTCATACATCTCTTGCAGGGGTTACTGAGATATGATCCTTCTGAAAGACTAACAGCTAGGGAAGCTCTTAGACATCCCTTCTTTATCAGAGATCACCTTAGGAAATGTTTTGGTGGGTGTAATTGA 1311 0.4325 MEMERVFEFPHSHMDRRPRKRARLGWDIPEVPKAQVGLFCGQEVGNISSYASSRGPSEHTTSSLYVKGVAQNGSPPWRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHVCIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGKQLLECVAFMHDLKMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYVKRVPKSSAIKVIDFGSTTYERKDQNYIVSTRHYRAPEVIIGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRLAEKFVRKGRLDWPEGATSRESIKSVMKLARLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERLTAREALRHPFFIRDHLRKCFGGCN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1351 436 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Glsi13g1351 436 FunFam Serine/threonine-protein kinase AFC2 174 423 - -
Glsi13g1351 436 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1351 436 CDD PKc_CLK 85 423 - -
Glsi13g1351 436 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1351 436 SUPERFAMILY Protein kinase-like (PK-like) 85 427 IPR011009 -
Glsi13g1351 436 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Glsi13g1351 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Glsi13g1351 436 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 426 - -
Glsi13g1351 436 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
Glsi13g1351 436 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1351 Glsi-ChrGlsi13 30783515 30786776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1351 103 423 Core Cell Cycle Gene Families AT1G76540 26.866 1.13e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Glsi13g1351 Pkinase 6e-51 CL0016