Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1344 ATGCATCAGGATTCGTCCGAGCAAGACCTAGACATTTCTGACTCCGACTTTGTGGAGGTTGATCCATCCGGTCGATATGGTCGGTACAAGGAAGTTTTAGGGAAGGGGGCTTTCAAGAAAGTATATCGAGCCTTTGATGAGTTGGAAGGAATTGAAGTTGCTTGGAATCAGGTTAAAGTGGCCGAGCTGGCGCTTAATTCTGAAGATTTGGATCGCCTATATTCAGAAGTTATTTTGCTGAAGACTTTGAAGCATAAAAATATAATTAAATTTTACAATTCATGGGTTGACAAAGAAAATGACAACATCAACTTCATTACTGAAATTTTCACTTCAGGAACATTACGCCAATATCGGAAAAAACACAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTCGGCAGATTTTGGAGGGCCTTTTCTATCTTCACAGTCATGATCCACCAATTATTCATCGGGACCTAAAGTGTGACAACATCTTTGTCAATGGGAATCAAGGCGAGGTGAAAATTGGTGACTTAGGATTGGCAGCCATTCTTCAGCAGGCCAATTCAGCTCACAGTGTCATAGGTACACCAGAGTTCATGGCCCCAGAGCTTTATGAAGAGGAATACAATGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTAGAATTGGTGACCGTTGAGTACCCATATGTTGAATGTGCCAATGCCGCTCAAATATTCAAGAAAGTGACATCTGGAATAAAACCAGCATCATTGGCGAAAGTGACAGATTCTGGGGTTAAAGAATTTATAGAAAAGTGTATTGCGAATGTTTCTGAACGATTACCTGCAAAAGATCTCTTGATGGATTCCTTTCTTCAGTCAATTCATGACAGTGATAGGACAGGACATAGTTGTGGTCATCATGTCATTGGTGGAAGCGCTGAGGATAATTCTGCGGAGACAGGTAGGGAATTCACAGTGGAAGGTCGAAGGAGAGATGTTAATACAATATTTCTGAAACTGAGAATACTAGACTCCTCAGGTCATATTCACAATATCCATTTTCCTTTTTACGTTGAGGCAGACACAGCAGTTTCTGTTGCTAGCGAAATGGTTGAGGAACTGGAACTCACTGATCAAGATGTTACAAATATTGCTGTGATGATTGACTCAGAAGTTCAAAATCACATTCCTGATTGGAATTCCAGTGAAACTCCTCTCGATAGTTTTGGCAAAGAGTTGACAGTTTCAGGTAGCTGTGCCTCTGAAACTAGGGGTGAGGCTTCTCCTGTGGGTAATGATTCTACCACTTCTACCGGTATTCTTGCATTGGAAATATTACCTTCAGGTCGTAAGTTTTGGTCTGACTCACCCAAGGCGGTTGGTCAAAAATCTCCATTAAGACCCGGTGCTTCAAACTTGTCCAGTAAAGTGGATGTGAATACTGAGGAAGGCAACCTGACTCGAAATGGTGCAACTCCAGTTTATCAGCAGGCTGGCGACTGTGTCGGTGATGGTGATAATAGTTCAGGGAATGAATCTAGCGGGACTGCTAATTCCCATTCCAATGTGAGAAGTTTTACATCTGAGGATTTAAAAGCAACCAAGGGAGAATCTCCTCTGGAAGAAATATCTAGAAGGTTAAAAGGTATTGAATTAGAAAATGTCAACTTAGTTGCCACAAAACTGGAGAATTTGTTGGTAAGACAGCAAGAGGAGTTAGATGAACTAAAGAGGAAGCATGAAGCAGCTATCTCAGACCTTCTAAAGGAGCTTCCCCCTGAAATGCGCCAAGAGGTTCTAAATATATATAACCTGGAGATACCTGACAGTGGAAATGTACTTGGTCAAGATGTGAAATTGGGTATTAACTTGGCTGATTTGCTTTCTTCATTTTCTGCAATTAAGATTTTCACCAGTCTTCAAAACAATAACATTCTATCCTCCATTCTCGACACCTCGAGCACTCTCAGAAGCTATTCTTCAATGGCAATTTCTTCGGCAGCAGCCTCAGCTTCCTCAAAGCTCATATATCCACATGCCTCTCCTTCCCCATCTTCCTCCTCTCCCACCTCCCTTTCTGTGTCATCCTCCTCCTCCACCACCACCACCAACCATAAACCGACAACCCCCGCAACCCATCTCTCCTCATCCTTCATTAACTCTTCCACAATTCTCCATCTTGCACCCTCTACCTCCTCTAATACTACTCGCCTACGCTCCTTCACAGTCCGAGCTGCTCGTGGTAAGTTCGAGCGGAAAAAGCCCCATGTAAACATCGGCACCATCGGCCATGTCGACCACGGGAAGACTACTCTTACTGCTGCTCTCACCATGGCCTTGGCGGCATTGGGCAACAGTGCCCCCAAGAAATACGACGAAATTGACGCTGCCCCAGAAGAGCGAGCTCGTGGAATCACCATTAATACTGCCACGGTTGAGTACGAGACTGAGAATCGCCATTATGCCCATGTCGACTGTCCTGGCCACGCTGATTATGTCAAGAACATGATCACCGGTGCTGCCCAGATGGACGGCGCAATCCTCGTTGTTTCCGGTGCCGACGGACCAATGCCACAGACTAAAGAGCATATCCTTTTGGCTAAGCAAGTTGGTGTGCCGAATATGGTTGTGTTTCTGAATAAACAAGACCAGGTTGATGATGAGGAGCTTCTGCAGCTTGTGGAATTGGAGGTTCGTGAGCTACTTTCATCCTATGAATTCCCCGGTGATGATATCCCCATCATTTCTGGTTCCGCTCTGTTAGCTTTGGAGGCATTGATGGCGAATCCCGCCATTAAACGCGGTGATAATCAATGGGTTGACAAAATTTACGAACTTATGGATTCTGTGGATAGCTACATTCCAATTCCTCAGCGTCAAACTGATCTTCCCTTTCTGCTTGCCATTGAAGACGTGTTTTCAATTACAGGTCGTGGAACTGTGGCCACCGGGCGCGTTGAAAGAGGTACAATTAAAGTTGGAGATATTGTAGATCTCGTTGGTGTGAGGGAAACTAGAAATACTACAGTCACTGGGGTGGAAATGTTTCAGAAAATCCTTGATGAGGCCATGGCAGGAGATAATGTGGGATTGTTGCTCAGAGGTATCCAGAAGGCTGATATACAGAGAGGGATGGTTTTGGCTAAGCCAGGCACCATTACCCCACATACCAAGTTTGTTGCAATTGTGTATGTCCTGAAGAAGGAAGAAGGTGGGAGGCATTCGCCATTCTTTGCTGGTTACAGGCCACAATTCTACATGAGAACTACTGATGTGACTGGCAGAGTGACCTCCATTATGAATGACAAGGATGAAGAGTCAAAGATGGTGATGCCTGGTGATCGTGTAAAGATGATTGTTGAACTAATAGTGCCTGTGGCTTGTGAGCAAGGTATGAGGTTTGCTATTAGAGAAGGGGGGAAGACTGTTGGAGCTGGTGTTATTCAATCAATCATTGAGTAA 3444 0.4428 MHQDSSEQDLDISDSDFVEVDPSGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVAELALNSEDLDRLYSEVILLKTLKHKNIIKFYNSWVDKENDNINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLFYLHSHDPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIFKKVTSGIKPASLAKVTDSGVKEFIEKCIANVSERLPAKDLLMDSFLQSIHDSDRTGHSCGHHVIGGSAEDNSAETGREFTVEGRRRDVNTIFLKLRILDSSGHIHNIHFPFYVEADTAVSVASEMVEELELTDQDVTNIAVMIDSEVQNHIPDWNSSETPLDSFGKELTVSGSCASETRGEASPVGNDSTTSTGILALEILPSGRKFWSDSPKAVGQKSPLRPGASNLSSKVDVNTEEGNLTRNGATPVYQQAGDCVGDGDNSSGNESSGTANSHSNVRSFTSEDLKATKGESPLEEISRRLKGIELENVNLVATKLENLLVRQQEELDELKRKHEAAISDLLKELPPEMRQEVLNIYNLEIPDSGNVLGQDVKLGINLADLLSSFSAIKIFTSLQNNNILSSILDTSSTLRSYSSMAISSAAASASSKLIYPHASPSPSSSSPTSLSVSSSSSTTTTNHKPTTPATHLSSSFINSSTILHLAPSTSSNTTRLRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIISGSALLALEALMANPAIKRGDNQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDIVDLVGVRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKADIQRGMVLAKPGTITPHTKFVAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVTSIMNDKDEESKMVMPGDRVKMIVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1344 1147 CDD EF_Tu 749 951 IPR041709 -
Glsi13g1344 1147 FunFam Elongation factor Tu 1086 1146 - -
Glsi13g1344 1147 Pfam Elongation factor Tu C-terminal domain 1046 1145 IPR004160 -
Glsi13g1344 1147 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1344 1147 Gene3D Translation factors 1086 1146 - -
Glsi13g1344 1147 Pfam Elongation factor Tu domain 2 973 1041 IPR004161 GO:0005525
Glsi13g1344 1147 NCBIfam elongation factor Tu 740 1147 IPR004541 GO:0003746|GO:0005525|GO:0006414
Glsi13g1344 1147 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Glsi13g1344 1147 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 576 - -
Glsi13g1344 1147 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1344 1147 MobiDBLite consensus disorder prediction 449 531 - -
Glsi13g1344 1147 MobiDBLite consensus disorder prediction 672 708 - -
Glsi13g1344 1147 Hamap Elongation factor Tu [tuf]. 739 1147 IPR004541 GO:0003746|GO:0005525|GO:0006414
Glsi13g1344 1147 FunFam Elongation factor Tu 739 951 - -
Glsi13g1344 1147 SUPERFAMILY Protein kinase-like (PK-like) 29 695 IPR011009 -
Glsi13g1344 1147 Gene3D Translation factors 954 1082 - -
Glsi13g1344 1147 CDD STKc_WNK 25 285 - -
Glsi13g1344 1147 Gene3D Transferase(Phosphotransferase) domain 1 110 291 - -
Glsi13g1344 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 974 IPR027417 -
Glsi13g1344 1147 CDD EFTU_II 959 1045 IPR033720 -
Glsi13g1344 1147 SUPERFAMILY Translation proteins 953 1049 IPR009000 -
Glsi13g1344 1147 Gene3D - 740 951 IPR027417 -
Glsi13g1344 1147 Coils Coil 546 584 - -
Glsi13g1344 1147 CDD EFTU_III 1048 1142 - -
Glsi13g1344 1147 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Glsi13g1344 1147 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Glsi13g1344 1147 MobiDBLite consensus disorder prediction 496 523 - -
Glsi13g1344 1147 Gene3D Phosphorylase Kinase; domain 1 12 108 - -
Glsi13g1344 1147 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1046 1146 IPR009001 -
Glsi13g1344 1147 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 789 804 IPR031157 -
Glsi13g1344 1147 PRINTS GTP-binding elongation factor signature 796 804 IPR000795 GO:0003924|GO:0005525
Glsi13g1344 1147 PRINTS GTP-binding elongation factor signature 832 843 IPR000795 GO:0003924|GO:0005525
Glsi13g1344 1147 PRINTS GTP-binding elongation factor signature 869 878 IPR000795 GO:0003924|GO:0005525
Glsi13g1344 1147 PRINTS GTP-binding elongation factor signature 752 765 IPR000795 GO:0003924|GO:0005525
Glsi13g1344 1147 PRINTS GTP-binding elongation factor signature 816 826 IPR000795 GO:0003924|GO:0005525
Glsi13g1344 1147 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 748 952 IPR000795 GO:0003924|GO:0005525
Glsi13g1344 1147 Pfam Elongation factor Tu GTP binding domain 748 949 IPR000795 GO:0003924|GO:0005525
Glsi13g1344 1147 MobiDBLite consensus disorder prediction 461 488 - -
Glsi13g1344 1147 FunFam Elongation factor Tu 954 1082 - -
Glsi13g1344 1147 NCBIfam small GTP-binding protein domain 751 883 IPR005225 GO:0005525
Glsi13g1344 1147 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 332 386 IPR024678 GO:0004674|GO:0005524
Glsi13g1344 1147 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1344 1147 Gene3D - 328 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1344 Glsi-ChrGlsi13 30747081 30755695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1344 15 398 MAP Kinase Kinase Kinase AT3G22420 52.477 1.38e-150 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Glsi13g1344 Pkinase 3.2e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1344 13 30747081 30755695 Glsi13g1344 13 30747081 30755695 ECH