Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1340 ATGGTCGATGTTATTGGGAAGTCAAGGAACATCGAGTTTTTTTTGGAAGTTCTGCAAGAGATGGAACGGCGTGACTTTGTAAATGATAGGAGTTTTTTGATTCTGATGAGGGCTTCGGGTGCTACGAGGGAGCTGAAGAAGTGCGTGGAGTTCTTCCACTTGATGAATTCCAATGGCTATGAGTATAATTTGGAGACTTTGAATAAGGTAGCTGAGACAATGTGTAGGTGTAAGGTGGTTGTGGAGGCTAAGTTTGTTGTTTTCAAATTGAAAGAATGGATTAAACCCAATGGGGATACTTATAAGCATTTGATTAAAGGGCACTCTGATTCTGGTGATTTCATTGAAGCTTCGAAGATTTGGAATTTGATGGTGGATGAAGGCTTCAATAGTAAATCGGTTTCGGAGCTCCGTGAAATTCATCGGTGGACCGTGGAAAGCACTTCCAGGATTTTCCCGCCCATTTTCAAAGAAACCCCCTTCTCATTGTCCCCTCCCTTTCCCAGTCCTAAAAAGATAACTGGCAACAAAATGAGTACTCCCATGGAGGCTACCCCGCAAAATCCCCCAATCGACGAAATCTCCGAACGAAATGGGGTTGCTGCCCTAGACTCATCTCCTTGTCCTATGCTTTCTGAAGAGAAAGTTCTTGTCTCTGTTGAAGTTTGTTTAAAGCCTTCGAGTACTGCTCGGATCGACGATGTCCGTTCCGCCGTTGAGAGGATGCTTGAAAAGAGGAGTTTGAGCTATATTGATGGACCCATACCTCTGCCTCTTGACGAAACGTTTCTTTCAGAAAACGTGCAAAGAATCTGTATTTGTGATACGGATGAATGGATGCACAACCATGAAGTTCTTTTATTCTGGCAAGTCAAGCCTGTTGTGCATGTCTTTCAGCTTAGCGAAGAAGGACCATGTGAGGAATTAGGCACTGACGGCCAACTTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAGGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTTAAGCAAAGGTTGTTAAGATATGCAGCGAGCGCTTTGCTCTTCACTGAAAAGGGTGTTGATCCATTTCTTGTTTCATGGAACCGAATTATTCTTTTACATGGACCTCCTGGGACTGGAAAAACATCTTTATGTAAAGCATTAGCACAAAAACTATCCATTCGATTCAATCACAGATACCCACAGTGCCAGCTGATTGAAGTTAACGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCAAAGCTTTTCCAAAATATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATAATTCTAACTACATCCAACATAACTGCTGCTATTGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCGCCAACTCTCCAAGCTCGCTATGCAATATTAAGGTCGTGCTTGCAGGAAATGATTCGTACAGGGATCTTGACAAGTCTACAGGATTGCAAGAGTACTACGCTTCCAAATTATGCTAGTGCGAAGGAGAGTTTGAACACACCAGAGAATCATGAGGCCGCTACACCCACGCAACTGTGTAAACAACTACTTGAAACAGCAGAGGCATGTGAGGGAATGAGCGGAAGGTCTTTGAGAAAGCTTCCATTCTTAGCACATGCTGCCCTTGCCAATCCTTTTGATTGCAACCCTATTAATTTCTTGTGTACAATGATAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCCGACTGA 1902 0.4243 MVDVIGKSRNIEFFLEVLQEMERRDFVNDRSFLILMRASGATRELKKCVEFFHLMNSNGYEYNLETLNKVAETMCRCKVVVEAKFVVFKLKEWIKPNGDTYKHLIKGHSDSGDFIEASKIWNLMVDEGFNSKSVSELREIHRWTVESTSRIFPPIFKETPFSLSPPFPSPKKITGNKMSTPMEATPQNPPIDEISERNGVAALDSSPCPMLSEEKVLVSVEVCLKPSSTARIDDVRSAVERMLEKRSLSYIDGPIPLPLDETFLSENVQRICICDTDEWMHNHEVLLFWQVKPVVHVFQLSEEGPCEELGTDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNHRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQNIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYAILRSCLQEMIRTGILTSLQDCKSTTLPNYASAKESLNTPENHEAATPTQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPFDCNPINFLCTMIETAKRERSELPD 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1340 633 Gene3D - 316 535 IPR027417 -
Glsi13g1340 633 Gene3D Tetratricopeptide repeat domain 1 153 IPR011990 GO:0005515
Glsi13g1340 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Glsi13g1340 633 CDD RecA-like_Pch2-like 317 515 - -
Glsi13g1340 633 FunFam pachytene checkpoint protein 2 homolog 311 533 - -
Glsi13g1340 633 ProSitePatterns AAA-protein family signature. 489 508 IPR003960 GO:0005524|GO:0016887
Glsi13g1340 633 Pfam ATPase family associated with various cellular activities (AAA) 371 516 IPR003959 GO:0005524|GO:0016887
Glsi13g1340 633 Pfam PPR repeat 100 129 IPR002885 -
Glsi13g1340 633 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 485 499 IPR001270 GO:0005524
Glsi13g1340 633 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 371 389 IPR001270 GO:0005524
Glsi13g1340 633 NCBIfam pentatricopeptide repeat 100 129 IPR002885 -
Glsi13g1340 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 601 IPR027417 -
Glsi13g1340 633 SMART AAA_5 367 519 IPR003593 GO:0016887
Glsi13g1340 633 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 189 630 IPR044539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1340 Glsi-ChrGlsi13 30723516 30732263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1340 316 534 Calmodulin-binding Proteins AT3G56690 30.804 4.21e-16 80.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1340 13 30723516 30732263 Glsi13g1340 13 30723516 30732263 ECH