LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g1339	ATGTATATGATTTCCGACTTTGCTTTAATATATTCTTTTTTCTTGGTGGGGCGGAGGGTGGGTTTAAATGTGCAGGTTAAGAGGATTAAGCTTGCCATGTTTTCAGATTGTCCAGTTCAAGTGAACAACTTTCCAAGCAAATGCGACAAGTCATCTGCAACTAAAGTGTCGAACGAAGGTCGCCCCCAAACAGCGATCTCCCATGTCGGCGTATTTCAATTGGACGAAATGGCGGACATTAAGTCCGGGGTTTGCTACTATTTTGAGCATTCATCTCATTATAAAAAGATGGAATCTGGAGATAGGTTCTGCTCAGTTGATGAGTTCAGTTTGGACGCGAAATGGCTAGTTGATCCTAAGCATCTATACGTTGGTCCGAGGATTGGAGAGGGCGCTCATGCAAAAGTCTACGAGGGAAAATATAAAAACCAGACTGTTGCTATTAAAATTGTACATAAAGGAGAAACTACAGAAGACATCGCCAAGAGAGAAGCCCGATTTGCTAGGGAGGTGGCAATGTTGTCTAGAGTTCAACACAAGAACTTGGTGAAGTTTATTGGTGCCTGCAAGGAGCCCGTAATGGTGATAGTCACTGAGCTCTTATCGGGAGGAACATTGCGCAAGTATTTGCTTAACATGCGGCCAAAATGCTTGGACATACATGTTGCCATTGGTTTTGCCCTTGATATTGCTCGTTCTATGGAATGCCTGCATTCTCATGGTATCATCCACCGTGACCTGAAACCTGAAAACTTACTCTTGACTGAAGACCAGAAAACAGTGAAGCTAGCAGATTTTGGCTTAGCAAGAGAAGAGTCATTAACAGAGATGATGACTGCTGAAACAGGAACTTATCGTTGGATGGCTCCAGAGTTGTATAGCACGGTCACCTTAAGGCAGGGAGAGAAGAAGCATTACAACCATAAGGTGGACGCTTATAGCTTTGCCATCGTTTTGTGGGAGCTCATACACAACAAACTACCATTTGAGGGCATGTCAAACCTCCAGGCAGCATATGCCGCAGCCTTTAAAAATGTGAGGCCCTGTGCAGAAAATATCCCGGAAGAATTGGCTGTAATTCTAACTTCATGTTGGCAGGAGGAACCAAACTCCCGGCCCAACTTCTCACAAATAATCCAAATGCTCCTTCATTATCTTTACACCATATCACCTCCTGAACCAATGATTCCTTCAAGAATATTCACACCTGAGAACACTGTCCTGCCACCAGAGTCCCCCGGCACACGCACTTTGATGGTGAAACGTGAGGACACAGGGGATACACCCCGAGCAAAGGAGGAAATTCAGCCTACAGGGTTTTCTTGCTGCTTCAGTCAGTGTTACTAG	1347	0.4469	MYMISDFALIYSFFLVGRRVGLNVQVKRIKLAMFSDCPVQVNNFPSKCDKSSATKVSNEGRPQTAISHVGVFQLDEMADIKSGVCYYFEHSSHYKKMESGDRFCSVDEFSLDAKWLVDPKHLYVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETTEDIAKREARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLSGGTLRKYLLNMRPKCLDIHVAIGFALDIARSMECLHSHGIIHRDLKPENLLLTEDQKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNVRPCAENIPEELAVILTSCWQEEPNSRPNFSQIIQMLLHYLYTISPPEPMIPSRIFTPENTVLPPESPGTRTLMVKREDTGDTPRAKEEIQPTGFSCCFSQCY	448

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g1339	448	ProSiteProfiles	Protein kinase domain profile.	122	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g1339	448	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	115	382	-	-
	Glsi13g1339	448	ProSitePatterns	Protein kinases ATP-binding region signature.	128	149	IPR017441	GO:0005524
	Glsi13g1339	448	SUPERFAMILY	Protein kinase-like (PK-like)	114	411	IPR011009	-
	Glsi13g1339	448	FunFam	Kinase suppressor of Ras 1	111	201	-	-
	Glsi13g1339	448	Gene3D	Transferase(Phosphotransferase) domain 1	202	390	-	-
	Glsi13g1339	448	Pfam	Protein tyrosine and serine/threonine kinase	125	382	IPR001245	GO:0004672\|GO:0006468
	Glsi13g1339	448	SMART	serkin_6	122	386	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g1339	448	Gene3D	Phosphorylase Kinase; domain 1	110	201	-	-
	Glsi13g1339	448	CDD	STKc_MAP3K-like	128	382	-	-
	Glsi13g1339	448	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	242	254	IPR008271	GO:0004672\|GO:0006468
	Glsi13g1339	448	FunFam	serine/threonine-protein kinase HT1	203	402	-	-
	Glsi13g1339	448	PRINTS	Tyrosine kinase catalytic domain signature	310	332	IPR001245	GO:0004672\|GO:0006468
	Glsi13g1339	448	PRINTS	Tyrosine kinase catalytic domain signature	353	375	IPR001245	GO:0004672\|GO:0006468
	Glsi13g1339	448	PRINTS	Tyrosine kinase catalytic domain signature	198	211	IPR001245	GO:0004672\|GO:0006468
	Glsi13g1339	448	PRINTS	Tyrosine kinase catalytic domain signature	236	254	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g1339	Glsi-ChrGlsi13	30715595	30721140	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g1339	105	448	MAP Kinase Kinase Kinase	AT5G50180	77.326	0.0	568

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Glsi13g1339		PK_Tyr_Ser-Thr	4.2e-59	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi13g1339	13	30715595	30721140	Glsi13g1339	13	30715595	30721140	ECH