Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1330 ATGGGTCGCCATTCCTGCTGTGTAAAGCAAAAATTGAGGAAAGGCTTATGGTCCCCTGAAGAGGATGAGAAGCTTTTCAATCATATAACTAGATTTGGTGTTGGCTGCTGGAGCTCCGTCCCCAAACTAGCTGGACTACAAAGATGTGGAAAAAGTTGTAGATTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGGATGTTCTCGCAACAGGAGGAGGATCTTATTCTCAGTCTTCATGAAGTTCTCGGCAATAGATGGGCTCAAATTGCAGCACAGCTACCGGGAAGAACAGATAATGAGATTAAAAACTTCTGGAATTCATGCCTAAAGAAGAAGCTTTTGAAGCAAGGGATCGACCCAACCACCCACAAGCCCCTTACCGAAGCTGAAATAAAGGAGGAGAAGAATAGCACAGAGACACCACCATCTATTCACATGCCCGTACTGTCTCAAGGACTTTCAGCTACATCAACCTTAGCCTCCTCACAAGGACCAGTACTTCTAATGAGCGATTCAAATTATTATGATGGTGGGCTAACCGAAGCTTCACGAGAAATGTTCATAAGCAAGCCAGCATTGGACCCGTTGTCCTACTTTGAATTCCGAATGGGTTATGATTCAAGTATGAGTCAATATAACCCGAGCTGTCTTAGACCATTTGATCGGCATCAGTTGGGAACGAGTTCAAGCTACGGATTGTCTTCAATATTGCCATGTTTGACAAACTCTGATCATAAAAACTTGTCGGTAACAGAATTTTCAGATAACAATTCAGCTTCCAAAATGAGTTCTTTATTCATGAATGAAGTCAAAGAAAATTTAAGCAATAGCTCAAACATGGGCACTTATCCTGGAGGAGCAGGGTGTCAGATGATAAGCAGCATGATGGAAAATGTAGGCTTCTCATGGGACGGTGAGAACAAGTTGGACCCTTACTTTCAGTTTCAAGTCAATGCCATAAAATCCGAGGAATTCAAGACAAGTTCATGGCAAGAAGAGCAGCTTCAGACTCACACTTCCATAGATTTTAATAGCTATCCGTTAACGTCACTCTCAGAAGATCTAACAGGAGCGAGTTATGATCTGTTCCAGCAGATATGA 1110 0.4234 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLILSLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLTEAEIKEEKNSTETPPSIHMPVLSQGLSATSTLASSQGPVLLMSDSNYYDGGLTEASREMFISKPALDPLSYFEFRMGYDSSMSQYNPSCLRPFDRHQLGTSSSYGLSSILPCLTNSDHKNLSVTEFSDNNSASKMSSLFMNEVKENLSNSSNMGTYPGGAGCQMISSMMENVGFSWDGENKLDPYFQFQVNAIKSEEFKTSSWQEEQLQTHTSIDFNSYPLTSLSEDLTGASYDLFQQI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1330 369 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Glsi13g1330 369 FunFam Transcription factor MYB86 69 137 - -
Glsi13g1330 369 CDD SANT 70 109 IPR001005 -
Glsi13g1330 369 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi13g1330 369 SMART sant 66 114 IPR001005 -
Glsi13g1330 369 SMART sant 13 63 IPR001005 -
Glsi13g1330 369 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi13g1330 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi13g1330 369 MobiDBLite consensus disorder prediction 127 147 - -
Glsi13g1330 369 Gene3D - 11 67 - -
Glsi13g1330 369 PANTHER MYB DOMAIN PROTEIN 55 1 279 - -
Glsi13g1330 369 FunFam MYB transcription factor 11 67 - -
Glsi13g1330 369 CDD SANT 17 61 IPR001005 -
Glsi13g1330 369 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi13g1330 369 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi13g1330 369 MobiDBLite consensus disorder prediction 128 142 - -
Glsi13g1330 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi13g1330 369 Gene3D - 68 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1330 Glsi-ChrGlsi13 30665757 30667104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1330 1 141 MYB Transcription Factor Family AT1G57560 79.433 7.03e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1330 Myb_DNA-binding 7.8e-13 CL0123