Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1325 ATGGCATCATCCAGCTCATACTCTTCTCCCTGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGTTGCATCTTTGCACCTTATTTCCCACCTGAAGAGCCCCAAAAATTCGCCAACGTCCACAAAATTTTTGGTGCTAGCAATGTGACTAAGCTCCTTAATGAACTGCTCCCTCACCAGAGGGAAGATGCAGTGAATTCCCTTGCCTATGAAGCAGAGGCTCGCGTCAGGGACCCAGTTTATGGCTGCGTAGGCGCCATCTCTTTCCTGCAGAGACAGGTTCAAAGGCTCCAGAAGGAGCTTGATGCAGCTAATGCTGATTTGCTCCGTTATGCCTGCAATGACATCCATCCTGCATCCCTTTCTGTGCCTCCAGGAATGACTTCACTTCAGCAAATTCCTCCAAGGCAAAGGTCTATGGAGTATATTGGAAGAATTGGTAATGAAGGAGGTGGGTTTTATCGCCAATTTCCTACCGCTTATTCTCTTCCCTATACTATCCCATGGACTGATCCCACTTCCGAGGGCATCAATGAGGGAGGAGGAGGTGGAGAATCCATCAAGCTCATCAATCTTCTTCACTCTGCACCAAGACGTAGAAAAGAAGCAAAAGAGCGGGTGAAATTTGGCAGGGTGAGGATAAGGATCAAGGATGGGTACAGTTGCCAACTTACCAAGCTAAGGCGTTTAGCGCCAAGGCTCCAAATTCGCACAGCCCATAACTCTTCCATGGCTGAACCCCAACAAGACTACCACCATTACCATGCCACCCAAACCGGTCCTTCCTCTTCACAGGTTCTAGCACTCGCCACCATCATCCCTTTCGGCGCTATTCTCCTGACCCTTGCGGGTATCACGCTCACCGGGACGGTTATCGGTCTCGCCGTCACCACCCCACTGTTTGTGATTTTCAGCCCGGTTTTACTCCCCGCAGCCCTTGTCATTGGCTTGGCTGTCACCGGGTTTTTGACATCTGGGGTGTTCGGAGTCACCGCGTTTTCGTCGTTAGCGTGGCTGGCTAACCATGTGCGTCGATCACGGTTGCCGGAGCAGCTGGAATATGCAAAACGTCGCGCGCAGGAGACGATGGGTCAAGTAGTCCAGAGTGCTAAAGAAGGTGGTGAGACTGTCGAGAGCAAACCCCAGGAACTGGGCCCTGAGGTCCATAATAAGCCTCAGGAGTCAAGAGAGAAGGTCCAAAGCAAGGCCCGCGAAGGGGGTAAGGCCCAAGCAGGGAAAAGTACATGA 1254 0.5167 MASSSSYSSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYACNDIHPASLSVPPGMTSLQQIPPRQRSMEYIGRIGNEGGGFYRQFPTAYSLPYTIPWTDPTSEGINEGGGGGESIKLINLLHSAPRRRKEAKERVKFGRVRIRIKDGYSCQLTKLRRLAPRLQIRTAHNSSMAEPQQDYHHYHATQTGPSSSQVLALATIIPFGAILLTLAGITLTGTVIGLAVTTPLFVIFSPVLLPAALVIGLAVTGFLTSGVFGVTAFSSLAWLANHVRRSRLPEQLEYAKRRAQETMGQVVQSAKEGGETVESKPQELGPEVHNKPQESREKVQSKAREGGKAQAGKST 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1325 417 MobiDBLite consensus disorder prediction 378 406 - -
Glsi13g1325 417 MobiDBLite consensus disorder prediction 365 417 - -
Glsi13g1325 417 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Glsi13g1325 417 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 240 - -
Glsi13g1325 417 Pfam Oleosin 266 374 IPR000136 GO:0012511|GO:0016020
Glsi13g1325 417 Coils Coil 89 116 - -
Glsi13g1325 417 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1325 Glsi-ChrGlsi13 30623413 30630779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1325 2 113 AS2 family AT5G63090 92.857 8.57e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi13g1325 Oleosin 8.7e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0661 02 4294448 4295341 Glsi13g1325 13 30623413 30630779 CCT
Glsi02g0661 02 4294448 4295341 Glsi13g1325 13 30623413 30630779 ECH
Glsi13g1325 13 30623413 30630779 Glsi13g1325 13 30623413 30630779 ECH