Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1320 ATGCCTGTAAATCCATGGACCCTCTTCTTCCTATGCCTCTCTCTCTTACTCCTACGGCATTCTTTTACAGCTTTTGCAGTAAACCAGCAAGGCGAAGCTCTTCTTTCATGGAAGAGAACCCTCAAGGGACCATCCCTAGAGGTGTTGAGTAATTGGGATCCAAATGACCATACACCATGTGGCTGGTTTGGAGTTGGCTGTAACTTGAAGAACGAAGTTGTAAAATTAGATCTGAGGTATGTGGATTTAGTTGGAAGACTTCCTTCTAATTTCACCTCATTGCTTTCCTTGAACAAGCTCATATTAACGGGAACGAACCTCACTGGTTCAATCCCAAAAGAAATAGGCACTCTTGGCAAACTCAGCTACTTGGATTTGAGTGACAATGCCTTGACTGGTGAAATCCCAAGTGAGCTTTGCTTCATGCCCAAGCTTGAGGAACTCCATCTGAATTCAAACCAGCTCGTGGGATCTATTCCACTTGCAATTGGAAACCTCACAAAGTTGGCGTGGCTGGTTTTATATGACAATCAACTAAGTGGTGAGATTCCCAGTACCACTGGCAACCTGAGGAACCTGCAAGTTATCAGAGCTGGTGGAAACAAGAACCTCGAAGGCTCTTTGCCACAAGAAATTGGCAACTGTACCAATTTGGTCATGTTGGGCCTTGCTGAAACAAGTATCTCAGGTTTTCTTCCTCCAACTCTCGGCCTCCTCAAGAAGCTTGACACCATTGCAATTTATACTTCCCTCCTCTCTGGTCAAATCCCTGCCGAACTTGGTGATTGCACTGAACTTCAAAATATTTATCTGTACGAGAACTCTCTCAGTGGATCCATACCAAGTAAATTGGGAAATCTGAGGAACCTCAAAAATCTTCTACTCTGGCAGAACAACTTAGTTGGCACCATCCCACCACAGATTGGGAATTGCTATCAGTTATCCGTCATTGACATCTCAATGAACTCACTGACCGGAAGCATTCCCAAAAGTTTTGGAAATTTGACGTTGCTTGAGGAACTCCAACTTAGCGTCAATCAGATTTCAGGCGAGATACCGGCAGAGCTAGGAAACTGTCAGCAACTCACTCACGTTGAGCTGGACAACAATCAAATCACGGGTACGATACCTTCGGAATTTGGAAACCTTAGGAATCTAACTTTGTTGTTCCTATGGCATAACAAGCTTGAAGGAACTATACCATCTTCTCTTTCGAATTGTCAAAATCTGGAAGCTGTGGATCTCTCACAGAATGGATTGACGGGTTCCATTCCAAAGGGGATATTCCAGCTCAGGAATCTGAACAAGCTTTTGCTACTTTCTAATAATCTCTCCGGGAAAATACCGTCCGAGATTGGAAATTGTACGTCTTTGATTCGGTTTCGAGCAAGCAACAATAAGATCACAGGAAACATTCCACCACAGATTGGGAATCTCGGGAATTTGAATTTCTTGGATCTTGGAAGCAACCGGATTTCGGGAGTGATTCCAGAAGAGATCTCAGGCAGCCGGAATCTCACATTTTTGGACCTACATTACAACTTGATCGCCGGGAACTTGCCGGAAAGTCTCAGTGAACTCATCTCGCTTCAATTTATTGATGTCTCCGATAATATGATCGAAGGTACGCTAAGCCCGAGCCTTGGATCGCTTGTCTCACTCACAAAACTGGTTCTCGGAAAGAACCATGTCTCGGGGTCAATTCCGAGTGAACTCGGTTCTTGTGGGAAGCTGCAATTGTTGGACCTCAGCAGCAATGAGCTCTCAGGAAACATCCCGGGTAGTCTGGGTAACATTCCGGCACTCGAAATTACACTGAATCTGAGCTGGAATCAACTCTCCGGTGAAATCCCTCAGGAATTTTCAGCCTTAAGCAAGCTTGGAATGTTAGACATATCCCATAATCAGCTCAGCGGTAGCCTTCAGTATCTCCAGGACCTCCAAAATCTGGTAGTTCTCAATATATCATACAACAAATTCTCAGGGCGCGTTCCAGACAAGCCATTCTTCTCAAAGCTGCCTCTCAGTGTGCTCGAGGGGAACCCGTCGCTCTGTTTCCCCGGTAACCAATGCGCCGGAGACGATTCCAGACGATCAGTTCGGCGGACAAAGGCGGCGCGTGTAGCTATGGTGGTCCTTCTGTGTATCGCGTGTGCGCTCTTCCTTGCGGCGCTCTACGTCGTCATCGCGGCAAAAAGACGCGGGTTCCCGGGGAACGATCTGGACCTTGATGGAAGGGATAGCGACGTGGAGATGGCCCCACCTTGGGAGATGACACTGTATCAGAAGCTCGACTTGTCAATCTATGACGTGGAGAAATGTCTCACAGCTGGCAACGTCATCGGGCGCGGACGATCCGGCGTCGTTTACAGGGTAAATCTCCCGGCGGGATTAACTATCGCGGTGAAACGGTACAGGTCATCGGAGAAATTCTCAGCGGCGGCATTCTCCTCGGAGATTGCGACGTTGGCAAGAATCCGGCACCGGAATATTGTGCGGCTATTGGGTTGGGCAGCGAACCGGAAAACAAAATTACTGTTTTTTGATTATTTACCAAATGGTAATTTAGATGCGCTCGTACACGAAGGGTGCACTGGTTTAATCGAGTGGGAGACCCGGTTCAAGATAGCATTGGGCGTGGCTGAGGGCTTGGCTTACTTACACCATGACTGCGTGCCTGCTATCTTGCACCGGGACGTGAAGGCTCTAAACATTTTGTTAGGAGAGACATATGAACCGTGTTTGGCAGATTTTGGATTTGCTAGATTGGTGGAAGACGATCACGGTCCGTTTTCTGCTAACCCACAGTTCGCGGGTTCTTACGGCTATATTGCGCCAGAGTATGGGTGCATGCTGAGAATCACAGAGAAAAGCGATGTGTTCAGCTTTGGAGTGGTTCTGCTGGAGATAATAACGGGGAAAAGACCCGTGGACGCATCGTTTGGGGAGGAGGGGCAGCATGTGATAGAATGGGTAAGAGAGAAGCTGAAGAGGAAAAAGGAGGCAGTTGAGGTACTGGATTCTAAGCTTCAAGGCCATCCAGACACACAAATACAAGAGATGCTTCAAACGCTCGGCATCGCTCTCTTGTGCACCAGTCGTCGCGCAGAGGATCGGCCCACTATGAAAGACGTGGCCGCATTATTGAGAGAGATTAGACAGGATCCTTCGCTTGCCGAGCCCCACAAGCCGACCACTAATAGTAACTCCTTGAAAACAACCCAAACTTCGTCGTATTCCTCGTCCTCATCGTTGTCGGTAACCCCAGCTCAATTGCTGCTCCTCCAACCCTCTTCTTATTCCTCCTCGTCTGCTTATAATTCATCTTTTTCGCCTGTAAGGAGTTAA 3348 0.4755 MPVNPWTLFFLCLSLLLLRHSFTAFAVNQQGEALLSWKRTLKGPSLEVLSNWDPNDHTPCGWFGVGCNLKNEVVKLDLRYVDLVGRLPSNFTSLLSLNKLILTGTNLTGSIPKEIGTLGKLSYLDLSDNALTGEIPSELCFMPKLEELHLNSNQLVGSIPLAIGNLTKLAWLVLYDNQLSGEIPSTTGNLRNLQVIRAGGNKNLEGSLPQEIGNCTNLVMLGLAETSISGFLPPTLGLLKKLDTIAIYTSLLSGQIPAELGDCTELQNIYLYENSLSGSIPSKLGNLRNLKNLLLWQNNLVGTIPPQIGNCYQLSVIDISMNSLTGSIPKSFGNLTLLEELQLSVNQISGEIPAELGNCQQLTHVELDNNQITGTIPSEFGNLRNLTLLFLWHNKLEGTIPSSLSNCQNLEAVDLSQNGLTGSIPKGIFQLRNLNKLLLLSNNLSGKIPSEIGNCTSLIRFRASNNKITGNIPPQIGNLGNLNFLDLGSNRISGVIPEEISGSRNLTFLDLHYNLIAGNLPESLSELISLQFIDVSDNMIEGTLSPSLGSLVSLTKLVLGKNHVSGSIPSELGSCGKLQLLDLSSNELSGNIPGSLGNIPALEITLNLSWNQLSGEIPQEFSALSKLGMLDISHNQLSGSLQYLQDLQNLVVLNISYNKFSGRVPDKPFFSKLPLSVLEGNPSLCFPGNQCAGDDSRRSVRRTKAARVAMVVLLCIACALFLAALYVVIAAKRRGFPGNDLDLDGRDSDVEMAPPWEMTLYQKLDLSIYDVEKCLTAGNVIGRGRSGVVYRVNLPAGLTIAVKRYRSSEKFSAAAFSSEIATLARIRHRNIVRLLGWAANRKTKLLFFDYLPNGNLDALVHEGCTGLIEWETRFKIALGVAEGLAYLHHDCVPAILHRDVKALNILLGETYEPCLADFGFARLVEDDHGPFSANPQFAGSYGYIAPEYGCMLRITEKSDVFSFGVVLLEIITGKRPVDASFGEEGQHVIEWVREKLKRKKEAVEVLDSKLQGHPDTQIQEMLQTLGIALLCTSRRAEDRPTMKDVAALLREIRQDPSLAEPHKPTTNSNSLKTTQTSSYSSSSSLSVTPAQLLLLQPSSYSSSSAYNSSFSPVRS 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1320 1115 SUPERFAMILY Protein kinase-like (PK-like) 758 1049 IPR011009 -
Glsi13g1320 1115 SMART LRR_sd22_2 118 150 - -
Glsi13g1320 1115 SMART LRR_sd22_2 479 502 - -
Glsi13g1320 1115 SMART LRR_sd22_2 383 412 - -
Glsi13g1320 1115 SMART LRR_sd22_2 624 649 - -
Glsi13g1320 1115 SMART LRR_sd22_2 263 289 - -
Glsi13g1320 1115 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 426 520 - -
Glsi13g1320 1115 Gene3D Ribonuclease Inhibitor 363 604 IPR032675 -
Glsi13g1320 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Glsi13g1320 1115 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 201 - -
Glsi13g1320 1115 PANTHER OS04G0122200 PROTEIN 439 1046 - -
Glsi13g1320 1115 FunFam Putative LRR receptor-like serine/threonine-protein kinase 605 690 - -
Glsi13g1320 1115 SMART LRR_typ_2 335 359 IPR003591 -
Glsi13g1320 1115 SMART LRR_typ_2 287 311 IPR003591 -
Glsi13g1320 1115 SMART LRR_typ_2 118 140 IPR003591 -
Glsi13g1320 1115 SMART LRR_typ_2 431 455 IPR003591 -
Glsi13g1320 1115 SMART LRR_typ_2 551 575 IPR003591 -
Glsi13g1320 1115 SMART LRR_typ_2 142 166 IPR003591 -
Glsi13g1320 1115 SMART LRR_typ_2 647 680 IPR003591 -
Glsi13g1320 1115 SMART LRR_typ_2 479 503 IPR003591 -
Glsi13g1320 1115 SMART LRR_typ_2 383 407 IPR003591 -
Glsi13g1320 1115 SMART LRR_typ_2 624 646 IPR003591 -
Glsi13g1320 1115 Gene3D Phosphorylase Kinase; domain 1 762 850 - -
Glsi13g1320 1115 Pfam Protein kinase domain 778 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1320 1115 MobiDBLite consensus disorder prediction 1060 1084 - -
Glsi13g1320 1115 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 521 604 - -
Glsi13g1320 1115 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1067 - -
Glsi13g1320 1115 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Glsi13g1320 1115 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 202 425 - -
Glsi13g1320 1115 SUPERFAMILY RNI-like 268 639 - -
Glsi13g1320 1115 Gene3D Ribonuclease Inhibitor 284 362 IPR032675 -
Glsi13g1320 1115 Gene3D Transferase(Phosphotransferase) domain 1 851 1075 - -
Glsi13g1320 1115 Gene3D Ribonuclease Inhibitor 605 692 IPR032675 -
Glsi13g1320 1115 ProSiteProfiles Protein kinase domain profile. 775 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1320 1115 SUPERFAMILY L domain-like 27 301 - -
Glsi13g1320 1115 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Glsi13g1320 1115 Gene3D Ribonuclease Inhibitor 186 283 IPR032675 -
Glsi13g1320 1115 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Glsi13g1320 1115 MobiDBLite consensus disorder prediction 1053 1084 - -
Glsi13g1320 1115 SMART serkin_6 775 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1320 1115 Pfam Leucine rich repeat 361 420 IPR001611 GO:0005515
Glsi13g1320 1115 Pfam Leucine rich repeat 288 348 IPR001611 GO:0005515
Glsi13g1320 1115 Pfam Leucine rich repeat 481 540 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1320 Glsi-ChrGlsi13 30556057 30560255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1320 25 1054 Receptor kinase-like Gene Family AT5G56040 54.957 0.0 1092
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi13g1320 Pkinase 4.2e-40 CL0016