Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1319 ATGGGTATCAAAATAGGGGGACAAGTAGAGAAGGTGAATGGGAAAGAATTGAGTTACAGTCAATTTGTGGAGAGGTACCTGGAGAAGAACCAGCCTGTGGTGCTCACTGGACTAATGGACGATTGGAGGGCTTGTAGAGACTGGGTCAACCATAATGGGCAACCCAATCTTCAATTTTTTTCTTCGCATTTTGGGAGTTCTAAAGTTCAGGTTGCAGATTGTGGCACTAGAGAATTCACGGATCAGAAGAGGGAGGAGATGCATGTTTCAGATTTTATCGGACGTTGGCTTGAGGGTTCTCCAGTACAGGACAATACTGAGAATTATACTAGTAATGATCAGTACTCCTTACTGTATTTGAAGGATTGGCACTTTGTAAAGGAGTATCCAGAGTATTTAGCATACATCACTCCAGTGTTCTTTTGTGATGACTGGCTCAACCTCTATCTTGACAACTACAGAATGCATACAAATCCTGACAGTTACCAACAAAATAACGAAATATGTTCTTCTGATTATCGTTTTGTTTACATGGGTGTAAAAGGATCTTGGACTCCTCTGCATGCTGACGTTTTCAGGTCATATAGCTGGTCAGCAAATGTCTGTGGGAAGAAGAGATGGCTTTTTCTAGCTCCGTCCCTGAGTCATCTTGTATTTGACAGGAATGTAAAAAGCTGTGTATATAACATCTTTGATGAAGTATGTGAATCAACATTTCCTGGTTTTAGACAGGCCATCTGGTTAGAATGCACACAAGAAGCAGGTGAAATTATTTTTGTTCCCAGTGGATGGTATCATCAAGTTCATAATCTGGAGGATACTATATCTATAAACCACAACTGGTTCAACGCCTTTAGTCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATTGAAGACATCAAGGATATATGCGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCAGCTAACACAGGGATGAACTTTTATGACTTCTTTACTTTCATAACATGCTTCACCCTGGCTAACTTGGCCTTGCTTTGCTATCTAAGTGGAAAATATGGAAGTCCTCCTGGAAATTCATCAACAGTCTCTCAGCATTTAGTTTTAAATCTTGGATCTGTGAGGAAGATTGTGACAGAGATGAAACACATGCACGCTCTGGAAGGAAATCATGATTGCTTCCTGGACATTATCAAATCATTAGAAGATCCTAGGTTTTCTAAATTGTGTGCAGGTTTGGGAAGAACATATGCGATGATACATGAGCAACCATATTTTTCTTCTGAATTTGAGCAAGCTTCAGTTGATTATTTGATGGGCCTTAATGTTTTGAAAGCATACACTTCTTCTCTGGTCTACACACCTGAACATCTCGTCAAACTTATGGACAGTGCTGTTGCAGAACTTGGTAACAATTACATTGAGGAGCTGTCTGTACTTCATGTTCATTAA 1461 0.4004 MGIKIGGQVEKVNGKELSYSQFVERYLEKNQPVVLTGLMDDWRACRDWVNHNGQPNLQFFSSHFGSSKVQVADCGTREFTDQKREEMHVSDFIGRWLEGSPVQDNTENYTSNDQYSLLYLKDWHFVKEYPEYLAYITPVFFCDDWLNLYLDNYRMHTNPDSYQQNNEICSSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLAPSLSHLVFDRNVKSCVYNIFDEVCESTFPGFRQAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAFSLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFITCFTLANLALLCYLSGKYGSPPGNSSTVSQHLVLNLGSVRKIVTEMKHMHALEGNHDCFLDIIKSLEDPRFSKLCAGLGRTYAMIHEQPYFSSEFEQASVDYLMGLNVLKAYTSSLVYTPEHLVKLMDSAVAELGNNYIEELSVLHVH 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1319 486 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 330 - -
Glsi13g1319 486 Pfam Cupin-like domain 21 284 IPR041667 -
Glsi13g1319 486 Gene3D Cupin 3 283 - -
Glsi13g1319 486 ProSiteProfiles JmjC domain profile. 126 298 IPR003347 -
Glsi13g1319 486 SMART cupin_9 118 298 IPR003347 -
Glsi13g1319 486 SUPERFAMILY Clavaminate synthase-like 8 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1319 Glsi-ChrGlsi13 30550849 30554852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1319 7 290 Glycosyltransferase AT1G78280 24.315 2.22e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi13g1319 Cupin_8 7.3e-26 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1319 13 30550849 30554852 Glsi13g1319 13 30550849 30554852 ECH