Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1299 ATGCATCTGCAAGAAAACCACTCAAAACCTCACATGAAAGATGAGCTTCCTCTTGGGGTCCCTTCATCACAGGGTTTCTTGCAAGATTTTAATTACCACCACATAGATCAGTTTCATGTAAATGGGTCTTCATCTAATCCAGTCTTTGGGATCCAAACTCTGGGTTTGGATCCTTTTGATAATTTTACCTATGGCTATGGGTGTTCGCCTGCAGAGTTTGATGTTTATGAGTGCAAGCCTTTCGTTGAAAACAATGGATGTGGGCATGCTCAGGTTATGGACAATTTTCAATATGGAGCTTATAATAGCTTGAACCTGCCTCAGAGAAATCAAGTGGATATGATGATTTCGAATCAAAGTTATGAGCCCTTCAATTCTCAAGAAACCAATAAGGCCGTGAATTTTGTGGTACCTGATGAAGTCTCGTGCATATCCCCAGCGAACTGTTACAGAAGAGTTGGCTTGAATAAGAAAAATAGGGCATCATCTCTAACCACTAGAAGGACTTACAAAGTTCGCAAGAAGTCCAACATAGTAAAGGGCCAATGGACGATAGAAGAAGATAGGTTGTTGATTCAACTGGTGGAACAATATGGATTGAGGAAGTGGTCTCATATTGCTCAAATGTTACCTGGCAGAATAGGCAAACAGTGCAGAGAGCGATGGCATAATCATCTGAGGCCTGACATAAAGAAGGACACATGGACAGATGAAGAGGACAAAATACTGATTGAAGCCCATGCAGAGATAGGAAACAAATGGGCAGAGATTGCTAAGAGATTGCCAGGAAGAACTGAAAACTCCATAAAGAACCATTGGAATGCAACCAAGAGAAGGCAATACTCCAAGAGAAAATGTCGCTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATACATCAAAAGCTTGAACTTGGACCAAAACCCGCCATTAGACTATCGCAAAAGATCATCTGCTAATAATACCAATGGCGCCATCACAAGCAAAGCAGCGGATCATGAGTTGTGTGCTGCCAATGACCGATTGGTGCCAAACTACGATTTTTGTTTCGAAGAGAACTTGTTTCAAGAAGGGTGCAGCATCGATTCTCTACTGGATCATATGCATTGTGCTTCTACGTCTATGGCTGAAAAAGGTTTTGATGAAGAGAAAATGCAGCGTGCTGCTAATACGGATGAGCATCATTTTGAGAGGGAGATGGCACCAATGGAAGGGTCTGAAGTTAAGAAGGAGCTGGATTTAGTGGAGATGATGTCTCAGACCATGTCGTCGGCACCACCCTCTGTATCCTTCCTCAGAATCTTCTTCAGAGGGCTAGGAGGGTTAGAGACCAATGGCTTTTTTGAGGAGTTGCTTGGGACGTTCCCTTCTGTTGTTTTTCTTTTTGGGACAAGTTGTGGTTTTGATTCGGAAAATGGGTCCGAGTTAGGAACGTCGATGGCCTTGCAAGATTTTGAGGAGAGCCTATACATCTCTTCACTAACTAACAAAGAACAGTTGGAGGGAACAGCCATTATTGAAAAGCAGAAGGAGATGCAACTAGTCTGTCTTCTCAGTTCAAAAAGAATTATGTCTGCTGCTTTGAAAGGACTGCTTCGTGCTTACCAGGGAAAAGGGCTCACCTCGAGAAAACAGATGTAG 1641 0.429 MHLQENHSKPHMKDELPLGVPSSQGFLQDFNYHHIDQFHVNGSSSNPVFGIQTLGLDPFDNFTYGYGCSPAEFDVYECKPFVENNGCGHAQVMDNFQYGAYNSLNLPQRNQVDMMISNQSYEPFNSQETNKAVNFVVPDEVSCISPANCYRRVGLNKKNRASSLTTRRTYKVRKKSNIVKGQWTIEEDRLLIQLVEQYGLRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDTWTDEEDKILIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDQNPPLDYRKRSSANNTNGAITSKAADHELCAANDRLVPNYDFCFEENLFQEGCSIDSLLDHMHCASTSMAEKGFDEEKMQRAANTDEHHFEREMAPMEGSEVKKELDLVEMMSQTMSSAPPSVSFLRIFFRGLGGLETNGFFEELLGTFPSVVFLFGTSCGFDSENGSELGTSMALQDFEESLYISSLTNKEQLEGTAIIEKQKEMQLVCLLSSKRIMSAALKGLLRAYQGKGLTSRKQM 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1299 546 CDD SANT 234 277 IPR001005 -
Glsi13g1299 546 Gene3D - 179 231 - -
Glsi13g1299 546 ProSiteProfiles Myb-like domain profile. 175 226 IPR001005 -
Glsi13g1299 546 CDD SANT 183 226 IPR001005 -
Glsi13g1299 546 Gene3D - 233 285 - -
Glsi13g1299 546 ProSiteProfiles Myb-like domain profile. 227 277 IPR001005 -
Glsi13g1299 546 FunFam Transcriptional activator Myb isoform A 179 232 - -
Glsi13g1299 546 SUPERFAMILY Homeodomain-like 177 273 IPR009057 -
Glsi13g1299 546 FunFam Transcription factor MYB119 233 297 - -
Glsi13g1299 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 230 IPR017930 -
Glsi13g1299 546 SMART sant 231 279 IPR001005 -
Glsi13g1299 546 SMART sant 179 228 IPR001005 -
Glsi13g1299 546 PANTHER MYB PROTEIN-RELATED 159 334 - -
Glsi13g1299 546 Pfam Myb-like DNA-binding domain 233 274 IPR001005 -
Glsi13g1299 546 Pfam Myb-like DNA-binding domain 180 226 IPR001005 -
Glsi13g1299 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 281 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1299 Glsi-ChrGlsi13 30407467 30411532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1299 11 368 MYB Transcription Factor Family AT4G18770 48.030 7.67e-104 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1299 Myb_DNA-binding 2.2e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1299 13 30407467 30411532 Glsi13g1299 13 30407467 30411532 ECH