Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1292 ATGGATAAAGCGTACTCCTCATTGCTCTTTCAGGGAAGATTTAGTCAAGCTGAGATGAGGCGTGGGGTCAGTGTAGGGAGCAGTAGAGAGACAGCAACTTCTCTTTCTCGGTGCAATGCTGATCATACACTGCTAGTGGCACTCAAGGTTAACAAGTACGAAGGACTGGGTGAAACTGTTATTATCCTTTTATCCCGGCTGGGGGATTTGCTTGTGAATGGGTTTTTCTTCTCTGCACATTTGCATGGAATCATCAGATCACTGGCTGCAGGTATAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATCCCTGTCGGTGGTGGTTGCAGAAAGAATAAGAAAGTTTCTAACAAGAAATCCAACGACCAATCACTTAATAATCAAAACCAAGCACAGTCCGAAACCTCCTATCATCACAATCCCAAGGATCTTCAACTTTCTTTCCCAGATGTGCAATTTTCTCATATAAGCAATTTACTTGGGACTAATGGGGGGGCTCTGGGAAACCCTAATTTTGTGGAGAGCAAGTATAATATTGGTATGCTCGAGAACCCTAGACCTATTGACTTCATGGAAGGTAAGATGGAAGGCATAATTGGGACTTTTAGGAACTTTAATTTCATGGGAAATAGTGACATGGGTATGGGTGTCGGGTTTGGGGACATAAATGGCCACAATGGTTTGCCACCAAATTTTCACGGTCTTTGCTCTCCGCCGTATGGGGGTATATCCCTTGATGGTAGCAACAATGGGACTTATTTAATGGACACTTGCCAGCGACTGATGCTGCCATATGATCATGCCAATGAGGACCAAAGTACAACAATTGATGTGAAGCCAAACCCTAAGCTATTGTCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCTGGAAAAGAGTCATTTGGGTATCTTAACGGTCTAGGATCATGGACCGGTGTGATGAATGGCTATGGATCGTCGACTACAAACCCTTTGGTCTAA 987 0.4448 MDKAYSSLLFQGRFSQAEMRRGVSVGSSRETATSLSRCNADHTLLVALKVNKYEGLGETVIILLSRLGDLLVNGFFFSAHLHGIIRSLAAGIRYWTKGGTLRNIPVGGGCRKNKKVSNKKSNDQSLNNQNQAQSETSYHHNPKDLQLSFPDVQFSHISNLLGTNGGALGNPNFVESKYNIGMLENPRPIDFMEGKMEGIIGTFRNFNFMGNSDMGMGVGFGDINGHNGLPPNFHGLCSPPYGGISLDGSNNGTYLMDTCQRLMLPYDHANEDQSTTIDVKPNPKLLSLEWQDQGCSDAGKESFGYLNGLGSWTGVMNGYGSSTTNPLV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1292 328 Pfam Dof domain, zinc finger 93 115 IPR003851 GO:0003677|GO:0006355
Glsi13g1292 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 93 155 IPR045174 GO:0003700|GO:0006355
Glsi13g1292 328 MobiDBLite consensus disorder prediction 120 142 - -
Glsi13g1292 328 MobiDBLite consensus disorder prediction 109 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1292 Glsi-ChrGlsi13 30345387 30348068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1292 93 328 C2C2-Dof Transcription Factor Family AT5G62940 39.576 1.69e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi13g1292 zf-Dof 2.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0702 02 4569844 4570958 Glsi13g1292 13 30345387 30348068 CCT