Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1286 ATGGAAAACGGACATGAATATAAGAAGGGGTTTTGGAATAAGGAGGAAGACAGAGTTTTAATGAAATACGTGAAGGAGCACGGAATAGGGAAGTGGAATCGTATTGCTAAAGTGACAGGGTTGAAGAGATGTGGCAAAAGTTGTAGACTGAGGTGGAAGAACTATCTAAGTCCAAATGTTAAGCGTGGAGATTTCTCAGAGGAAGAAGACGACCTTATTATTCGCCTCCATAATCTCCTTGGAAATAGGTGGTCTTTGATAGCAGGGAGGGTGCCGGGGAGGACAGACAACCAAGTGAAGAACTATTGGAACACTCATTTGAGCAAGAAGCTGGGTGTTAAGAAGGCAAAGACCAATGTCTCTGCATCTCCCGGGACATTCTCTAATGAAGCAAAAGAGATCACTTCCAATAGCCCATCAAAGCCTAAGGGATCTTCCCATCGTAACGATGAAGGCGAGAGTGAAAAGTTTGGGGCAGGTAGCTCTTTAAATGCCATGCAAGAGGTGATGCTTATGGAAGATCGTGATTTTGAGAGCAACTTTTGGCTTGCTAACAGCGGACACGGCCTTTACCCCTCTTCCTTGACAGAACCTTACCATGACTATTTTGTTGACCTCGATTGGGCTGCCTTAGATATGAGCGGCGCTGTGCCTGAGGCTGAGGCTCGACTAAGCACGAGTGCTGTATTGTAA 693 0.456 MENGHEYKKGFWNKEEDRVLMKYVKEHGIGKWNRIAKVTGLKRCGKSCRLRWKNYLSPNVKRGDFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNYWNTHLSKKLGVKKAKTNVSASPGTFSNEAKEITSNSPSKPKGSSHRNDEGESEKFGAGSSLNAMQEVMLMEDRDFESNFWLANSGHGLYPSSLTEPYHDYFVDLDWAALDMSGAVPEAEARLSTSAVL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1286 230 MobiDBLite consensus disorder prediction 118 159 - -
Glsi13g1286 230 Gene3D - 64 147 - -
Glsi13g1286 230 MobiDBLite consensus disorder prediction 119 143 - -
Glsi13g1286 230 FunFam Transcription factor WER 63 136 - -
Glsi13g1286 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 147 - -
Glsi13g1286 230 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Glsi13g1286 230 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Glsi13g1286 230 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Glsi13g1286 230 SMART sant 61 109 IPR001005 -
Glsi13g1286 230 SMART sant 8 58 IPR001005 -
Glsi13g1286 230 Gene3D - 9 61 - -
Glsi13g1286 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Glsi13g1286 230 FunFam MYB-related transcription factor 8 61 - -
Glsi13g1286 230 CDD SANT 12 56 IPR001005 -
Glsi13g1286 230 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Glsi13g1286 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Glsi13g1286 230 CDD SANT 65 107 IPR001005 -
Glsi13g1286 230 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1286 Glsi-ChrGlsi13 30212285 30214927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1286 5 149 MYB Transcription Factor Family AT5G40330 67.808 1.49e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1286 Myb_DNA-binding 7e-15 CL0123