Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1283 ATGAAGAACTTTTACGGGTTTAAACAAATTCCCAGCAGCAAGAAGTCAGGGAGAAGGCTTTCGCTTGGTGAATACAAGCGAGCTGTGTCATGGTCCAAGTATCTGGTATCTTCCGGGGCTGCGATAAAGGGAGAGGGAGAAGAGGAATGGAGCGCCGATATGTCTGAGCTATTCATAGGGTCCAAATTTGCTTCTGGTCGGCATAGCAGGATCTACAGAGGCATTTACAAGCAGAGGGATGTGGCAATCAAGCTGGTTAGTCAACCAGAGGAGGACGAGGACTTGGCTGCTTTACTTGAGAAGCAATTTACTTCAGAAGTTGCTTTGCTCTTTCGATTGCACCATCCAAATATCATTACTTTTGTTGCCGCGTGCAAGAAACCTCCTGTCTTTTGTATAATTACTGAATATATGGCTGGGGGATCGTTGAGAGCATACCTGCATCAGCAGGAACCACATTCAGTTCCACTCAAACTTGTTTTGAAACTAGCCCTAGACATTGCTCGCGGAATGCAATATCTTCATTCTGAGGGGATACTTCATAGGGATCTCAAATCCGAAAATCTGTTGCTGGGAGAAGATATGTGTGTAAAAGTAGCTGATTTTGGAATCTCATGCTTAGAATCTCAGACTGGTAGTGTGAAAGGATTTACCGGAACTTACCGTTGGATGGCACCCGAAATGATAAAAGAAAAGCATCATACCAAGAAAGTAGATGTCTATAGTTTCGGCATAGTCCTATGGGAGCTTTTAACTGGACTGACACCATTTGACAACATGACACCAGAACAGGCAGCTTTTGCAGTTTCCCACAAGAATGCAAGGCCTCCATTACCAAGTGAATGTCCAAGGGCGTTTAGTCATCTGATAAACAGATGCTGGTCAAGCAAGCCAGATAAGAGGCCACATTTTGATGAGATAGTTTCGCTTTTGGAGGGTTACAATGAATCCCTTGAAGAGGACCCAGAATTTTTCTCAACTTACAAACCACCTCCTACTAATCTTGTTCTCAGATGCTTACCAAAATGTATTACTGGCCATACATCTTCATCTTCATCTTCATCTTGCAAGACTTAG 1077 0.4345 MKNFYGFKQIPSSKKSGRRLSLGEYKRAVSWSKYLVSSGAAIKGEGEEEWSADMSELFIGSKFASGRHSRIYRGIYKQRDVAIKLVSQPEEDEDLAALLEKQFTSEVALLFRLHHPNIITFVAACKKPPVFCIITEYMAGGSLRAYLHQQEPHSVPLKLVLKLALDIARGMQYLHSEGILHRDLKSENLLLGEDMCVKVADFGISCLESQTGSVKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTGLTPFDNMTPEQAAFAVSHKNARPPLPSECPRAFSHLINRCWSSKPDKRPHFDEIVSLLEGYNESLEEDPEFFSTYKPPPTNLVLRCLPKCITGHTSSSSSSSCKT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1283 358 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 317 - -
Glsi13g1283 358 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Glsi13g1283 358 Pfam Protein tyrosine and serine/threonine kinase 59 311 IPR001245 GO:0004672|GO:0006468
Glsi13g1283 358 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Glsi13g1283 358 CDD STKc_MAP3K-like 64 311 - -
Glsi13g1283 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Glsi13g1283 358 SMART serkin_6 57 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1283 358 Gene3D Transferase(Phosphotransferase) domain 1 140 329 - -
Glsi13g1283 358 ProSiteProfiles Protein kinase domain profile. 57 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1283 358 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Glsi13g1283 358 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Glsi13g1283 358 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Glsi13g1283 358 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Glsi13g1283 358 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Glsi13g1283 358 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1283 Glsi-ChrGlsi13 30200596 30203842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1283 11 320 MAP Kinase Kinase Kinase AT1G62400 62.069 7.40e-142 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi13g1283 PK_Tyr_Ser-Thr 6.4e-67 CL0016