Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1279 ATGGCTATTAGAGGCGTTGATTTTAAGTGGTACGATGGGTTTTTCTTGTCGATGCTCGCCACCAGCATAGTTATTGTCGCAATTAATTGGAAGCGCTACCATTCTTGTACATACCCGTTGCACATATGGACTGTGGTTGATTACACTATTGTGTTTATCTTTCGGCTGATGATGTTTGTTGATAATGGACTTTGTGCCGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGCTTCTGTGGAAGGGTAGCAGTCCTTTCAATCCTTGCTTTGCTTCTGTATCCATTTCTTTGGGCTTGGACTATAATTGGTTCCCTGTGGTTCAGCAGTGCCAGGAACTGTTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGATTGCTTTGCATTGCTTGCATGTCATTAGGGAAGTGGTTGACACGAAGACAAGCACACTTATTACGTGCTCAACAGGGTATCCCTGTATCTGAATATGGAGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGCCAGGAAACAAGAGGAATGGGCCAAGATGCTGCTGCATATCATCCTGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAGGCTTTAATTCAGGAACTCCCCAAGTTCAGGTTGAAGGCTGTTCCAACCGACTGCAGTGAATGCCCCATCTGCTTAGAAGAATTCCATGTGGGGAATGAGGTTCGTGGTCTTCCTTGCGCACACAATTTTCATGTTGAGTGCATTGATGAGTGGCTTCGGCTAAATGTGAAATGTCCTCGGTGCCGTTGTTCAGTATTTCCAAATCTTGATCTTAGTGCTCTGTCAAATCTCCGTCCTGAATCAGAACGATCCTCTGCCAGCGTTGTGACAACAACAACCAGATATGTGAGAGGCCAACCTTCTAGTCAGAGTTATTTGTTAAGATTACAGGGTCTTCTCCGCCCAGTGCATTCAGAAATTGCTCGGCCAGGTGGTGACCTGGATAGTATCTTGGAAAATGCTGAGAATGGTGGTGTACCTATTGTGACTCGAAATGCATCAACTCGAGACCAAGCCCCTTCAATAGAATGCATACCTGTCAGTCTCTCCCCTGCACGAAATTAG 1146 0.4599 MAIRGVDFKWYDGFFLSMLATSIVIVAINWKRYHSCTYPLHIWTVVDYTIVFIFRLMMFVDNGLCAGMGLDFGWQQRYARFCGRVAVLSILALLLYPFLWAWTIIGSLWFSSARNCLPEEGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTTTRYVRGQPSSQSYLLRLQGLLRPVHSEIARPGGDLDSILENAENGGVPIVTRNASTRDQAPSIECIPVSLSPARN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1279 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Glsi13g1279 381 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Glsi13g1279 381 Pfam Ring finger domain 234 276 IPR001841 -
Glsi13g1279 381 SMART ring_2 235 275 IPR001841 -
Glsi13g1279 381 SUPERFAMILY RING/U-box 217 284 - -
Glsi13g1279 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 362 IPR044793 GO:0004842|GO:0010182
Glsi13g1279 381 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1279 Glsi-ChrGlsi13 30179146 30183344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1279 58 361 C3H Transcription Factor Family AT3G47990 73.856 5.02e-164 459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1279 13 30179146 30183344 Glsi13g1279 13 30179146 30183344 ECH