Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1276 ATGAAGGAGACCGGTGATGGGTTTGTGAGGGCCGATCAGATTGATCTGAAGAGCATAGACGAACAGCTCGAGAGGCACCTCAATAAGGCATTGACTATGGAGAAGAACAAACAGAAAGAAGAAGAAGATGCTAATAATATTGTCACCGCTGCTGCCATTAAAACTACTGCCGGGCCTCCCTTCAAGAAGCAAAGGCAGGAGTGGGAGATTGACCCTTCCAAGTTAATCATCAAGACTGTTATAGGTCGCGGCACTTTCGGCACCGTCCACCGTGGTTTCTACGATGGCCAAGATGTCGCCGTCAAATTGCTGGACTGGGGTGAAGAAGGCCACAGAACTGAAGCCGAAATTGCTTCACTAAGGGCAGCGTTTACACAGGAAGTTGCTGTTTGGCATAAACTTGATCATCCTAATGTCACCAAGTTTATAGGAGCAACAATGGGGTCATCAGAACTACAGATACAAACTGATAATGGTCTGATTGGCATGCCAAGCAATGTCTGTTGTGTTGTTGTGGAGTATCTTCCTGGGGGTACGCTGAAATCTTACCTAATAAAAAACAGGAGAAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTAGATCTTGCAAGAGGGCTCAGTTATCTTCACTCTGAAAAGATTGTCCACAGAGACGTAAAGACAGAGAACATGCTGTTGGATAAGACACGGACAGTTAAAATTGCTGATTTTGGTGTTGCTCGTGTTGAGGCTTCAAATCCTAATGACATGACAGGGGAGACTGGTACACTTGGTTACATGGCTCCAGAGGTACTAAATGGCAACCCTTATAACAGGAAGTGCGATGTGTACAGTTTCGGCATCTGTTTATGGGAGATATATTGTTGTGACATGCCATATCCTGACCTTAGTTTCTCAGAGGTTACTTCAGCTGTTGTTCGTCAGAATCTGAGACCAGAAATACCAAGATGTTGTCCAAGTTCTCTTGCAAATGTAATGAAAAGATGCTGGGATGCAAATCCTGATAAGCGACCAGAGATGGACGAGGTGGTTACCATGCTAGAGGCCATTGACACATCAAAAGGTGGAGGCATGATCCCAGTTGATCAGCAGCAGGGTTGTCTTTGTTTCCGTAAGTACAGAGGACCGTGA 1137 0.4538 MKETGDGFVRADQIDLKSIDEQLERHLNKALTMEKNKQKEEEDANNIVTAAAIKTTAGPPFKKQRQEWEIDPSKLIIKTVIGRGTFGTVHRGFYDGQDVAVKLLDWGEEGHRTEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATMGSSELQIQTDNGLIGMPSNVCCVVVEYLPGGTLKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSEKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPVDQQQGCLCFRKYRGP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1276 378 SMART serkin_6 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1276 378 Pfam Protein tyrosine and serine/threonine kinase 77 349 IPR001245 GO:0004672|GO:0006468
Glsi13g1276 378 Coils Coil 16 43 - -
Glsi13g1276 378 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 66 352 - -
Glsi13g1276 378 Gene3D Phosphorylase Kinase; domain 1 63 158 - -
Glsi13g1276 378 SUPERFAMILY Protein kinase-like (PK-like) 57 349 IPR011009 -
Glsi13g1276 378 ProSitePatterns Protein kinases ATP-binding region signature. 81 102 IPR017441 GO:0005524
Glsi13g1276 378 PRINTS Tyrosine kinase catalytic domain signature 210 228 IPR001245 GO:0004672|GO:0006468
Glsi13g1276 378 PRINTS Tyrosine kinase catalytic domain signature 320 342 IPR001245 GO:0004672|GO:0006468
Glsi13g1276 378 PRINTS Tyrosine kinase catalytic domain signature 276 298 IPR001245 GO:0004672|GO:0006468
Glsi13g1276 378 PRINTS Tyrosine kinase catalytic domain signature 172 185 IPR001245 GO:0004672|GO:0006468
Glsi13g1276 378 FunFam Serine/threonine-protein kinase HT1 175 360 - -
Glsi13g1276 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Glsi13g1276 378 PIRSF ILK 25 358 - -
Glsi13g1276 378 CDD STKc_MAP3K-like 81 349 - -
Glsi13g1276 378 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1276 378 FunFam Kinase suppressor of Ras 1 64 159 - -
Glsi13g1276 378 Gene3D Transferase(Phosphotransferase) domain 1 175 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1276 Glsi-ChrGlsi13 30165987 30169141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1276 1 310 MAP Kinase Kinase Kinase AT5G50000 82.650 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi13g1276 PK_Tyr_Ser-Thr 3.9e-64 CL0016