Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1272 ATGCATGCTTCCAATCAAACAAGTCGCCGCATTCTGTCATTTCCGGCGGTGCGTCCTTGCGAAGGCATCTCTCCGCCGACTCTTCTCACCTCTTTGATTGTTCTTTCTCAGAATATATGCAATTTCCAATCCGAATTCTTCCCCACTCAACGACGAAATGCCAGAGAAATAACCCGCCAAGTCGGTATCATTCTCCTCTTCCTTGAGGAAATTCGAGAGCGTGGAGTGGTTTTGACGGACTCCGTTGCTCTTTGCTTCTCCGAGCTCCACCTGACTTTTCAAAAAATCCACTTTTTACTGGAGGATTGTACTCGGAAAGGTGCTCGGCTTTGGATGCTAATGAAATCTCAGTACCTTGCCACTCAATTCCGGGTTTTGATTCGTTCGGTGGCCACTGCTCTCGAGGTTTTGCCTCTGCATCGGATCGAGATTTGTTATGAAGTGAAAGAGTTGGTGGAATTAGTGGCCAAGCAAGCTCGGAAAGTGAAGTTCGAACTAGACCCGCTTGACGAACGGACCACCAAGCGAGTCCATTCGGTTTTGAATCACTTTGAGAGGGGAATGGAACCCGACTTAAATGCTATGCAGCAAACCCTGGACTATCTTGGAATCAAGAACTGGAATGATTGCAACAAAGAGATCCAATTCTTGGAAGATGAAATAAGCTCCGAGTGCTCTGATGGGGATGAAAGGGAAGTTCCTCTTTTGAGTAGTTTAGTTGGGTTCTTGAGCTACTGTAGGGTAGTGATATTCGAAACTCTGGATTTCCGAGACACCACCGATCAATCGGAGACAAGGTGCAGCACAGAGATGATTAGCTGCATAAATCCAGAGGATTTTCGGTGCCCTATTTCCCTTGAATTAATGACTGATCCTGTGACTGTATCGACGGGTCAGACTTATGATCGAGCTTCCATTCAGAAATGGCTCAAAGCTGGAAATAGGATATGCCCCAAGACAGGGGAGAAGCTGAAAAACACAGAGTTGGTCCCAAATACCATGCTCAGAAAGCTAATCCAACAGTCATGTGCCGATAATGGCATTTCGCTCACCAAATCCAGTAGGCGAAGTCGCAGCATAACAAGGACTATCGTCCCGGGTAGTACAGCAGCAGCGCATGCCGTGCAATTTCTTTCGTGGTTTATTGCTCGAAGGCTTGTCTTTGGAACAAGTGACCAGAAAAACAAGGCAGCTTACGAGATTCGTTTGCTTGCAAGGTCCAATATTTTCAACAGGGCGTGTTTAATTGAAGTGGGAACGGTGCCTCCACTGCTTAATCTTATAACTACAAATGATAAATTAACGCAAGCGAATGCAATAGCTGCTCTGTTGAAGCTCTCAAAGCATGCCAAAGGTCAGGAAATGATAATGGATAGTGGAGGTCTAACACCGATTCTTATGGTCCTGAAAAAAGGGTTAAGTTCAGAAGCTCGCCAAATCGCAGCTGCTACTATATTTTATCTGTCTTCGGTGAAAGAACACGGGAAAATGATTGGAGAAAACCCAGAGGCAATTCCAGCTTTAGTAGAACTAATCAAGGAAGGAACAACTTGTGGGAAAAAGAATGCCGTTGTTGCGATTTTCGGGTTGCTCGTGCTTCCTCAGAATCATCAGAGGGTGCTCGCAGCTGGTACTGTTTCTGCGTTAGTAGGTATTTTAGCTTCCTCAGACAAGGCTGACCTTACCACTGATTCCTTAGCAGTTCTTGCAGCCTTGGCCGAGAACGTTGAGGGAGCAAATGCTATATTACAAGCCTCCGCTTTGCGTTTAATCATGGGGATGTTGCAATCCTTAACATCGCGTGCAGGGAAAGAGCACTGTGTCTCAATTCTGCTGTCCCTGTGCGTGCATGTTGGTTCGGAGGTGGTGGCTGTTCTAGCCAACGACCCTTCGCTGATGCCTTCGCTTTACTCGCTTCTCACGGATGGTACATCTCATGCAGGCAAGAAAGCACGTTCCCTCATCAAACTTCTACAAGAATTCCACGAAACCAGAACTTCTCGATGGGTTGGTTCTTCGGTCGCACAGGAACAATCCGTTCACGTTTGGTGA 2052 0.4654 MHASNQTSRRILSFPAVRPCEGISPPTLLTSLIVLSQNICNFQSEFFPTQRRNAREITRQVGIILLFLEEIRERGVVLTDSVALCFSELHLTFQKIHFLLEDCTRKGARLWMLMKSQYLATQFRVLIRSVATALEVLPLHRIEICYEVKELVELVAKQARKVKFELDPLDERTTKRVHSVLNHFERGMEPDLNAMQQTLDYLGIKNWNDCNKEIQFLEDEISSECSDGDEREVPLLSSLVGFLSYCRVVIFETLDFRDTTDQSETRCSTEMISCINPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNRICPKTGEKLKNTELVPNTMLRKLIQQSCADNGISLTKSSRRSRSITRTIVPGSTAAAHAVQFLSWFIARRLVFGTSDQKNKAAYEIRLLARSNIFNRACLIEVGTVPPLLNLITTNDKLTQANAIAALLKLSKHAKGQEMIMDSGGLTPILMVLKKGLSSEARQIAAATIFYLSSVKEHGKMIGENPEAIPALVELIKEGTTCGKKNAVVAIFGLLVLPQNHQRVLAAGTVSALVGILASSDKADLTTDSLAVLAALAENVEGANAILQASALRLIMGMLQSLTSRAGKEHCVSILLSLCVHVGSEVVAVLANDPSLMPSLYSLLTDGTSHAGKKARSLIKLLQEFHETRTSRWVGSSVAQEQSVHVW 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1272 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 587 IPR000225 GO:0005515
Glsi13g1272 683 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Glsi13g1272 683 SUPERFAMILY ARM repeat 391 658 IPR016024 -
Glsi13g1272 683 Gene3D - 376 666 IPR011989 -
Glsi13g1272 683 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Glsi13g1272 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
Glsi13g1272 683 FunFam RING-type E3 ubiquitin transferase 276 348 - -
Glsi13g1272 683 FunFam RING-type E3 ubiquitin transferase 356 669 - -
Glsi13g1272 683 PANTHER U BOX DOMAIN-CONTAINING 79 658 - -
Glsi13g1272 683 Pfam U-box domain 277 341 IPR003613 GO:0004842|GO:0016567
Glsi13g1272 683 SMART arm_5 407 448 IPR000225 GO:0005515
Glsi13g1272 683 SMART arm_5 533 574 IPR000225 GO:0005515
Glsi13g1272 683 SMART arm_5 449 490 IPR000225 GO:0005515
Glsi13g1272 683 CDD RING-Ubox_PUB 277 329 IPR045210 -
Glsi13g1272 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
Glsi13g1272 683 Pfam Armadillo/beta-catenin-like repeat 411 447 IPR000225 GO:0005515
Glsi13g1272 683 SUPERFAMILY RING/U-box 277 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1272 Glsi-ChrGlsi13 30138392 30150569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1272 1 683 U-box Gene Family AT1G60190 40.576 1.22e-173 510