Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1271 ATGGCAGCTCGAAGGCTTTCCTGGCTGCTTTCTCGCTCTGGAGCTGCTTCTCTGCTTCACACACCAGGAAGAAACTCTGGCCTGTGGAGGAACGCTAATAGATTTAGTACCGCAGTAGCTGTTGAGGAACTAATTACTCCACAAGTTCAAATAAGTTACACACAGCATCTAATAAACGGGCAATTTGTGGATGCTGCCTCAGGGAAAACTTTTCCAGCATATGATCCGCGCACAGGAGAAGTGATTGCTCATGTTGCTGAAGGCGATGCCGAAGATATCAACCGAGCAGTGTCAGCAGCTCGCAAGGCCTTCGATGAAGGACCTTGGCCAAGAATGACTGCTTATGAAAGATGTCGGATATTGCTGCGCTTTGCTGATTTGGTTGAGAAGCATAGCAATGAGCTTGCAGCTCTCGAGACCTGGAACGCTGGGAAGCCTTATGAACAGTCTGCCAAATCTGAATTACCATTGTTTGTTCGTCTATTTCACTACTATGCTGGTTGGGCGGACAAAATCCATGGTCTGACGGTTCCCGCAGATGGAGATTATCATGTCCAGACGTTGCATGAACCAATTGGCGTAGCAGGACAAATTATACCTTGGAACTTTCCTCTCGTCATGTTTGCTTGGAAAGTTGGACCGGCTCTAGCATGTGGTAATACCATCGTCCTCAAGACTGCAGAGCAAACACCGCTAACTGCTCTCTATGTGGCAAAACTACTTCATGAGGCTGGTCTTCCCCCGGGTGTTTTGAATGTAATTTCAGGGTATGGTCCAACTGCTGGTGCACCTCTTGCAAGTCATATGGATGTGGACAAGCTAGCATTCACTGGATCAACTGACACTGGGAAACTGGTACTTGAATTGGCGGCAAGAAGCAATCTGAAGCCTGTGACGTTAGAGCTGGGAGGGAAATCACCTTTCATAGTATGTGAGGATGCTGACGTTGACAAGGCTGTAGAACTTGCCCACTTTGCTCTGTTCTTTAATCAGGGGCAATGTTGCTGTGCTGGGTCTCGTACCTTTGTACATGAGCGAATCTATGATGAGTTCTTGGAGAAATCAAAGGCACGTGCCATGAGACGTGTTGTCGGTGATCCCTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATTGACGATGAACAATTTGAGAAAGTCCTAAGGTACATACGATCTGGTATTGAAAGCAAGGCTACCCTTGAATGCGGAGGAGACAGAATTGGCTCAAAGGGCTTCTTCATCCAACCAACTGTGTTCTCAAATGTTCAGGATGATATGTTAATAGCAAAGGATGAAATCTTTGGGCCAGTTCAATCCATCTTGAAATTCAAGGAGATTGAAGAAGTGATACGAAGGGCAAATGCGACCCGCTATGGTCTGGCAGCAGGTGTGTTCACGAAGAACGTGAACACGGCCAACACTTTGATGAGGGCGCTGAGGGTTGGAACTGTGTGGATTAATTGCTTTGATGTTTTCGATGCTGCTATCCCTTTTGGTGGGTACAAGATGAGCGGCATAGGCAGGGAGAAGGGAATCTACAGTCTTAACAATTATTTGCAGGTGAAAGCTGTCATTTCACCGTTGAAGAATCCTGCGTGGCTGTAA 1605 0.4692 MAARRLSWLLSRSGAASLLHTPGRNSGLWRNANRFSTAVAVEELITPQVQISYTQHLINGQFVDAASGKTFPAYDPRTGEVIAHVAEGDAEDINRAVSAARKAFDEGPWPRMTAYERCRILLRFADLVEKHSNELAALETWNAGKPYEQSAKSELPLFVRLFHYYAGWADKIHGLTVPADGDYHVQTLHEPIGVAGQIIPWNFPLVMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLLHEAGLPPGVLNVISGYGPTAGAPLASHMDVDKLAFTGSTDTGKLVLELAARSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFLEKSKARAMRRVVGDPFKKGVEQGPQIDDEQFEKVLRYIRSGIESKATLECGGDRIGSKGFFIQPTVFSNVQDDMLIAKDEIFGPVQSILKFKEIEEVIRRANATRYGLAAGVFTKNVNTANTLMRALRVGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLNNYLQVKAVISPLKNPAWL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1271 534 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 300 307 IPR029510 GO:0016491
Glsi13g1271 534 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 41 524 - -
Glsi13g1271 534 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491
Glsi13g1271 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 58 522 IPR016162 GO:0016491
Glsi13g1271 534 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 58 316 - -
Glsi13g1271 534 Pfam Aldehyde dehydrogenase family 62 524 IPR015590 GO:0016491
Glsi13g1271 534 CDD ALDH_F2BC 51 525 - -
Glsi13g1271 534 SUPERFAMILY ALDH-like 48 527 IPR016161 GO:0016491
Glsi13g1271 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 304 493 IPR016163 GO:0016620
Glsi13g1271 534 FunFam Mitochondrial aldehyde dehydrogenase 2 306 495 - -
Glsi13g1271 534 FunFam Aldehyde dehydrogenase, putative 496 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1271 Glsi-ChrGlsi13 30134843 30138243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1271 1 534 Aldehyde Dehydrogenase Gene Family AT3G48000 78.743 0.0 899