Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1268 ATGTCCGTACCGGGTGATACGAGGATTATTATATTTGAAGGAGACGAGGAGAATTGGACGGAGTCTCCGTCCAACCAAAAGGCCTTCGTAGAATCCTTACACTGGAATTCTTTGTTATTGGAGCAGTTAGATTCTTTTCAGCTTATCAGGGGAGTAATATACATTGGTGGCATTCTTTCATTCATTCATGCAAATGTTGAGATTATTTTTTCAGTGTTGAATGATATCAATGTTGGTTTTTGCTTTTCTTTGGTTCAATTCTTTGAGATCCTTAGCTGTTGCTCTACAAAATACGGCACTCTTATAGCTCAATTACTGGGAAATTCAATAAAGATGGTGGTAAGATCATGCATGAATTTGTTGGACTTGGTGTCAGGGGATGTTTTAAATTTCCCTCAAACTCCTAGACCTCTTCCGCGATCTATGACTGCTCCAGGAGTTATTTCCAATGTAGATGTCACACAAAGCAATGACGATGATGATTCAAATTCTTTCTCATCAGAATTCCGTCAAAAGATAGTTGTGGTAGCAAATTGGCTTCCTGTCAATGCGCAAAAGGATAAATCTGGCAGGTGGTGCTTTAGTTACGATGAAGATTCAATTTTTTTGCACCTAAAGGATGGTCTTTCTTCTGATGCTGATGTTGTTTATGTGGGATCTTTAAATGTTGAAGTGGATGCAAGTGAACAAGAAAAAGTTTCACTTGAGTTGCTGGAGGAATTCCATTGCTTGCCTACCTTTCTTCCTTCAGACCTCCAGAACCAGTTTTATAATGGATTCTGCAAGCAGTATTTGTGGCCTCTATTCCATTACATGTTGCCCATGTATCCAAATTATTGCAATCGCTTCGATAGGTCACTTTGGCAGGCCTATCTTTCTGCTAACAAGATATTTGCAGATAAGGTTATGGAAGTTATTAACCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTTATGATCCTCCCAACATTTCTGCGGAAGAGGTACAGTAGGGTCAAGCTAGGATTTTTCCTCCACAGTCCATTTCCTTCTTCAGAGATTTATAGGACTCTGCCTGTCAGATATGAAATTTTGAAAGCACTGCTCAATACAGATTTAATAGGTTTTCATACATTTGATTATGCTCGCCATTTTTTGTCTTGCTGTGGTCGAATGCTTGGCTTGGAATATGAATCCAAAAGGGGTTACATTGGGCTTGAATACTTTGGCCGTACTATAAACATCAAAATTTTGCCTGCAGGAATTCATATGGGTCGACTTCAATCTGCCTTAAATCATCCATTTTCTTCTGCCAAAGTCAGAGAAATTCGTGAGCAGTTGAAGGGGAAAAAGCTTATCCTTGGGGTTGATGATATGGACATATTCCAAGGCATCAGTCTAAAGCTGTTGGCCATGGAACAACTTCTGCAGCAGAATCCAAAACTGCAAGGTGAAATAGTTCTTGTCCAAATTGTAAATCCCCCATGGAGTTCTGGCAAAGATGTTGAGGAAGCACAGAAGGAGACATACCTTACTGCCAAAAGGATAAATGAAAAGTTCGGTTTCCCAGGTTATGAACCCGTCATCATTATTGATCATCCTATTCCATTCTATGAGAAGACAGCCTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTGCGGGATGGTATGAATTTAGTTCCATACAAGTATATTGTCTGTAGGCAGGGGAGTCCTAAAATGGATGAAGCCTTAGATATTGGTTCTGAGTCCCCTCATACAAGTGGACTTGTTGTTTCTGAGTTTGTAGGTTGCTCACCATCTCTTAGTGGGGCAATCAGGGTGAACCCATGGGACATTAATGCTGTAGCTGAAGCGCTAAATTTGGTCATCAAAATGCCCAGTTTTGAGAAACAGTTGAGGCAGGAGAAGCACTACCGATATGTTAGCTCGCATGATGTGGCCTACTGGGCCCGAAGCTTTATGCAAGATCTTGTGCGTTCATGTATGGATCACAACAGTAATCGGTTCTGGGGCATTGGCTTTGGACTGGGTTTCAGAATCTTGTCTCTTTCTCCTAGTTTTAGGAAGCTGTCCATTGACCGCATTGTCTCTGCCTATGAAAGGACTAATAGCAGGGCAATATTTTTGGACTACGATGGTACTATTGTACCTCAATCTTCCATTGTTAAAAGCCCTAGCCCTGAAGTCATATCTGTTCTAAATAACCTTTGCAGTGACCCTGAGAACACTGTGTTTATAGTAAGTGGGCGGGGGAAGACTTCTTTGAGTGAATGGTTTGATCAGTGTGAGGATCTTGGTTTAGCAGCTGAGCATGGCTATTTCATAAGGTGGGGTAAAAGCGCAAGATGGGAAACCAGTGATATAGTTACAGATTTTGCTTGGAAAAGGATTGTGGAACCTGTAATGAGATCATATACCGAAGCAACAGATGGGTCCTATATAGAGACCAAGGAGAGTGCCTTGGTATGGCATTATTATGATGCTGATTCTGATTTTGGATCTTGGCAAGCCAAGGAGCTGATGGATCAACTTGAAAGTGTACTCGCAAATGAGCCTGCAGTTGTTAAAAAGGGGCAGCACATTGTTGAAGTCAAGCCACAGGGGATTACTAAAGGGTTAGTTGCAGAGAAAGTTCTGTCTTTCCTTAGCAGGAACGGGAAACCGCCGGATTTTGTGCTGTGCATTGGGGATGATAGATCCGATGAGGATATGTTTGAGAGCATATCAACCAAAGCTTACGGTGAAACTTCGTCTCCAGAACCGGAGATATTTGCTTGCACTGTTGGCCAAAAACCAAGCAAAGCTAGGTACTACCTCGATGACACAGTGGACGTGATGGTGTTACTTGAAGGCCTTATTACTGCTTCGGGGTCCAAGTCTAGATGCTCCTCAGAAGTTCCTTTTGAAAAAACCCAAGTCTGCTTCGAGAATATTGCTTGA 2934 0.4162 MSVPGDTRIIIFEGDEENWTESPSNQKAFVESLHWNSLLLEQLDSFQLIRGVIYIGGILSFIHANVEIIFSVLNDINVGFCFSLVQFFEILSCCSTKYGTLIAQLLGNSIKMVVRSCMNLLDLVSGDVLNFPQTPRPLPRSMTAPGVISNVDVTQSNDDDDSNSFSSEFRQKIVVVANWLPVNAQKDKSGRWCFSYDEDSIFLHLKDGLSSDADVVYVGSLNVEVDASEQEKVSLELLEEFHCLPTFLPSDLQNQFYNGFCKQYLWPLFHYMLPMYPNYCNRFDRSLWQAYLSANKIFADKVMEVINPEDDYVWVHDYHLMILPTFLRKRYSRVKLGFFLHSPFPSSEIYRTLPVRYEILKALLNTDLIGFHTFDYARHFLSCCGRMLGLEYESKRGYIGLEYFGRTINIKILPAGIHMGRLQSALNHPFSSAKVREIREQLKGKKLILGVDDMDIFQGISLKLLAMEQLLQQNPKLQGEIVLVQIVNPPWSSGKDVEEAQKETYLTAKRINEKFGFPGYEPVIIIDHPIPFYEKTAYYALAECCIVNAVRDGMNLVPYKYIVCRQGSPKMDEALDIGSESPHTSGLVVSEFVGCSPSLSGAIRVNPWDINAVAEALNLVIKMPSFEKQLRQEKHYRYVSSHDVAYWARSFMQDLVRSCMDHNSNRFWGIGFGLGFRILSLSPSFRKLSIDRIVSAYERTNSRAIFLDYDGTIVPQSSIVKSPSPEVISVLNNLCSDPENTVFIVSGRGKTSLSEWFDQCEDLGLAAEHGYFIRWGKSARWETSDIVTDFAWKRIVEPVMRSYTEATDGSYIETKESALVWHYYDADSDFGSWQAKELMDQLESVLANEPAVVKKGQHIVEVKPQGITKGLVAEKVLSFLSRNGKPPDFVLCIGDDRSDEDMFESISTKAYGETSSPEPEIFACTVGQKPSKARYYLDDTVDVMVLLEGLITASGSKSRCSSEVPFEKTQVCFENIA 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1268 977 FunFam Alpha,alpha-trehalose-phosphate synthase 425 640 - -
Glsi13g1268 977 CDD HAD_TPP 704 945 - -
Glsi13g1268 977 Gene3D Glycogen Phosphorylase B; 425 640 - -
Glsi13g1268 977 NCBIfam HAD-IIB family hydrolase 704 905 IPR006379 -
Glsi13g1268 977 Coils Coil 976 977 - -
Glsi13g1268 977 Gene3D - 832 963 IPR023214 -
Glsi13g1268 977 Gene3D - 702 818 IPR023214 -
Glsi13g1268 977 Gene3D Glycogen Phosphorylase B; 163 424 - -
Glsi13g1268 977 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 832 963 - -
Glsi13g1268 977 Pfam Glycosyltransferase family 20 172 655 IPR001830 GO:0003824|GO:0005992
Glsi13g1268 977 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 165 423 - -
Glsi13g1268 977 NCBIfam trehalose-phosphatase 702 951 IPR003337 GO:0003824|GO:0005992
Glsi13g1268 977 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 702 819 - -
Glsi13g1268 977 CDD GT20_TPS 172 655 IPR001830 GO:0003824|GO:0005992
Glsi13g1268 977 FunFam Trehalose-6-phosphate synthase 2 787 865 - -
Glsi13g1268 977 Pfam Trehalose-phosphatase 706 939 IPR003337 GO:0003824|GO:0005992
Glsi13g1268 977 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 172 658 - -
Glsi13g1268 977 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 139 950 IPR001830 GO:0003824|GO:0005992
Glsi13g1268 977 SUPERFAMILY HAD-like 703 950 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1268 Glsi-ChrGlsi13 30118251 30124772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1268 112 976 Trehalose Biosynthesis Gene Families AT1G23870 67.013 0.0 1233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0723 02 4713318 4717822 Glsi13g1268 13 30118251 30124772 CCT
Glsi13g1268 13 30118251 30124772 Glsi13g1268 13 30118251 30124772 ECH