Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1267 ATGGGTCGAAATCCCATCTGGGTACTCTTCTTCGTGGTCTTCCCGTTCTTTCCAAAGGCCTATTCAGAGGATGAAGAAGTGAAGAAGTCCCTCATCAGATTCATGGACAAACTTGAGCCAGGGATTACACAAAGAGATGCCAACTGGGGCTGGAACCTGACTTCAGACCCCTGCATTGACCAATGGCATGGGGTGGTCTGTTATTCAGGGTTCAAATTTGTGAGGAGTATAGTTCTTGAGCATTCCAGTTTAACGGGGAATTTTGACGCCAGTTCTGTTTGCACGGTAAAGTTTCTTCAAAGCCTTAGCTTGAAGAATAACAATTTACATGGGCTGATATCAGAGGATATAGGAAACTGCAAATCATTGACCCACTTGTATTTAAGTGGGAACAATTTCTCCGGTGATCTTCCTATTTCTCTGGCTCAGCTAAGTAATTTGAAACGGATTGATATTTCGGACAACAATTTTTCTGGAGAGATTCCTTATATGTCTCGTATTTCAGGGTTACTATCCTTTCGTGCTCAAAATAACGAACTCACTGGGGTAATTCCGGATTTTGATTTCTCCAACCTCGAGGAGTTCAATGTCTCCAACAACAATTTAAATGGTCCAATTCCTGATGTCAAAGGCAAGTTCCAAGCAGACAGCTTTTCTGGTAATCCCAATTTATGTGGAACACCACTTCCAAAGGTCTGCCCCCCATCTCCTCCGCCACATCAAAAGAAAAACAGAAGCTCTTTAAGTGATGGTTTGGCTATATATTCAGGCTATGTGATTCTTGTTATAGTTGTCTTGCTTTACTTCACCTTTAAAATTGTAACGATATTCAAGGCCAAAGAAGAAGCACTAGATGCAGAAAAGAAGGAAGTGGCAGAGGAAACTAGCAGGGACAAGCATAGTGAAACTTCCAATATTGAAGTTAAGAACACTGGCATTGGGCTAGGATCAGAGGACTCAATGACATCTACTGAAAGCGGGATGACTGTATCAAGTTTGGTTGTTCTTTTGAGCCCAGTGGCGAGGACATTGAGATTTGAGGACTTGCTGAGAGCTCCTGCTGAATTGGTTGGGAGAGGAAAGCATGGAAGCCTCCACAAGGTGATGCTGGACAACGGGGTAATTTTGGCAGTGAAGAGAGTTAAAGATTGGGGGATTTCAAAAGCAGATTTTGAGAGAAGAATGCACAAGATAGACCAAGTGAAGCATCCATGTGTGCAACCACTTCTTGCATTTTATTGCTCCCAGCAAGAGAAGCTCCTCGTATACGAATACTTGCAGAATGGCAGCCTCTTCGAGATGTTCTATGGATCCCAAAATGGCCAAACTTTTGACTGGGGGAGCAGACTTAATGTCGCAGCCAACATATCTGAGGCTTTAGCTTACATGCACGAGGAGCTTCGTGAAAGTGGAATAGCTCACGGTAACTTAAAATCCAGTAACATATTGTTTGACAAGAATATGGATCCATGCTTAAGCGAATATGGGCTAATGGTAGTGGAAAATCAAGATCAATCTGCCCTTTCTCGCAACAGAAGTATCAAGAACAGAAATCTGAGCGCTGTTGGAGCTCATGCTTACAGCACTTTCAAGGTGGATACATATTCGTTTGGAGTGATACTTCTTGAACTGCTGACAGGAAAAGTGGTTCAAAATAAGGGGTTTGATTTGGCTGAGTGGGTGAACTCAGTGGTGAGAGAGGAATGGACTGTTGAAGTTTTCGACAAGTCACTAATCTCAGAAGGTGCGAGTGAAGAGAGGATGATGAACTTGTTGCAAATAGCACTGAAATGCGCAAGTGCTTCTCCAAATGATAGACCAAGTATGAGTGAAGTTGCAGTGATGACGATTACGTTGAAAGAGGAAGAAGAGAGATCCATAACCCTTTGA 1890 0.4286 MGRNPIWVLFFVVFPFFPKAYSEDEEVKKSLIRFMDKLEPGITQRDANWGWNLTSDPCIDQWHGVVCYSGFKFVRSIVLEHSSLTGNFDASSVCTVKFLQSLSLKNNNLHGLISEDIGNCKSLTHLYLSGNNFSGDLPISLAQLSNLKRIDISDNNFSGEIPYMSRISGLLSFRAQNNELTGVIPDFDFSNLEEFNVSNNNLNGPIPDVKGKFQADSFSGNPNLCGTPLPKVCPPSPPPHQKKNRSSLSDGLAIYSGYVILVIVVLLYFTFKIVTIFKAKEEALDAEKKEVAEETSRDKHSETSNIEVKNTGIGLGSEDSMTSTESGMTVSSLVVLLSPVARTLRFEDLLRAPAELVGRGKHGSLHKVMLDNGVILAVKRVKDWGISKADFERRMHKIDQVKHPCVQPLLAFYCSQQEKLLVYEYLQNGSLFEMFYGSQNGQTFDWGSRLNVAANISEALAYMHEELRESGIAHGNLKSSNILFDKNMDPCLSEYGLMVVENQDQSALSRNRSIKNRNLSAVGAHAYSTFKVDTYSFGVILLELLTGKVVQNKGFDLAEWVNSVVREEWTVEVFDKSLISEGASEERMMNLLQIALKCASASPNDRPSMSEVAVMTITLKEEEERSITL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1267 629 Gene3D Ribonuclease Inhibitor 27 187 IPR032675 -
Glsi13g1267 629 FunFam Nuclear pore complex protein NUP107 24 186 - -
Glsi13g1267 629 Gene3D Transferase(Phosphotransferase) domain 1 426 628 - -
Glsi13g1267 629 Gene3D Ribonuclease Inhibitor 188 233 IPR032675 -
Glsi13g1267 629 MobiDBLite consensus disorder prediction 291 324 - -
Glsi13g1267 629 Coils Coil 277 297 - -
Glsi13g1267 629 MobiDBLite consensus disorder prediction 291 305 - -
Glsi13g1267 629 ProSiteProfiles Protein kinase domain profile. 351 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1267 629 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515
Glsi13g1267 629 Gene3D Phosphorylase Kinase; domain 1 326 425 - -
Glsi13g1267 629 MobiDBLite consensus disorder prediction 306 324 - -
Glsi13g1267 629 PANTHER OS05G0588300 PROTEIN 8 617 - -
Glsi13g1267 629 Pfam Protein kinase domain 355 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1267 629 SUPERFAMILY L domain-like 52 229 - -
Glsi13g1267 629 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Glsi13g1267 629 SUPERFAMILY Protein kinase-like (PK-like) 354 615 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1267 Glsi-ChrGlsi13 30113660 30115944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1267 38 612 Receptor kinase-like Gene Family AT1G48480 34.091 1.15e-97 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi13g1267 Pkinase 7.9e-25 CL0016