Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1262 ATGCGGAGACTCGACCTCCAGGTGGGATTGATGGTACGCGTTGGGTTTGAAGCTGGGATCGAGGCTGGGATTGGGGAAAATGCAAGGCTATGCATGGGCGTGGAGGATGGTCGCAAAATTAGTGTTGGTGATTGTGCTCTCTTCAAACCACCTCAAGATCACCCAGCTTTTATTGGAATAATTCGTAGGCTGACAGTTGGTAAAGAGAATAAATTAAAGTTAGGTGTTAATTGGCTTTATCGACCTAGTGAAGTAAAACTTGGCAAGGGTATCCTATTGGAGGCTGCACCAAACGAAATTTTCTACTCCTTTCATAAGGATGAGATTCCTGCTGCATCGGTGCTTCATCCTTGTAAAGTTGCATTTCTTCCTAAAGGTGTTGAACTTCCTTCAGGCATTTCATCATTTGTGTGTCGGAGGGTTTATGACATTGCAAACAAGTGTGTATGGTGGCTAACCGATCACGATTATATTAATGACCGTCAAGAAGAGGTAGATAAGTTATTATACAGGACTCGAATAGAAATGCATGCAACAGTGCAATCAGGTGGGCGATCTCCTAAGCCAATGAGTAGTCCAACATCAATGTCACAGTTAAAATCAGGTTCAGATAGTGTCCAGAACAGCACTTCTTCCTTTCCTTCTCAAGTTAAGGGTAGGAAAAGGGAGAGATTAGATCAAGGGTCTGAGCCTGTAAAGCGAGAACGCACAATAAAAATTGAGGATGGAGATTCTGGTCATTTTAGGCAGGAAAGTATTATCAAGGCAGAGATTGCCAGAATTACAGATAAGGGAGGGCTTGTTCATACTGAAGGGGTTGAGAAATTAGTGCAGCTCATGGTTCCTGATAGAAGTGAGAAAAAGATAGATTTGGCTAGCCGGTCAATGCTTGCAGCTGTTATTGCAGCAACAGATAAGTTTGACTGTCTTAGTCGGTTTGTGCAGCTGAGGGGTTTGCCGGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGATTGGTGATGTTAGTGGGTGTAGGGATGGTGATAAATCTGTTGAGGAATTTCTATTGGTACTACTTCGGGCACTTGATAAACTTCCTGTAAATCTTCAGGCTTTACAAACTTGTAATATTGGTAAATCTGTGAATCATTTGCGAACACATAAAAGCTCGGAAATCCAGAAGAAAGCAAGGGGCTTAGTTGACACATGGAAGAAACGTGTTGAAGCTGAAATGAATATTAATGATGCAAAGTCTGGTTCAGGTCAGACTGTCCCCTGGCCTGCCAGACCACGACTTCCTGAAGTTTCTCAAGGTGGGAATAGACATTCAGGTGGATCATCTGATGTTGCCATGAAGAGCTCAGTCACACAGCTTTCGGCATCCAAAACTGCCTCTGTGAAGATTGTCCAGGGAGAGAATACTACAAGATCTGCATCTCCAGGGTCTATGAAATCAGTTCCCTCACCTGCGTCTGCAACTATGAACTTAAAAGATGGGCAGCCCCGCGGCCCTGCTTGCAGTGGAGCCTCTGATATTCCTACACCAAATGGTAAGGATGAGAAAAGCAGTGGCTCTAGTCAATCTCACAACAATAGTCAATCTTGTTGTAGTGACCATGCTAAAACGGGGGGTATTTCAGGAAAGGAAGATGCCAGGAGCTCTACTGCAATGAGTGTGAACAAGATATCAGGTAGTTCTTCTCGGCACCGAAAATCTATTAATGGATTCCCAGTTTCGGCTCCATCTGGAGGGCAAAGGGAAACTGGGTCATCCAGAAATTCCTCCTTGCACAAAAATTCAATTTCAGAAAAAATATCTCAATCTGGATTAACAGAAAAATCACCTGATAGAACTTCTCCTGAGGGGAATACTTCTAAGCTGATTGTTAAGATTCCAAATCGAGGTCAAAGTCCTGTACAAAGTGCCAGTGCATGTTCTTTTGATGATGCTTCAATTATTAACAGTGCTTCTTCTCTTGTCATTTCAGATAAGCATGATCAGTTTGATCGGAGTTTAAAGGAAAAGGGTGATTTTTGTCGAGCTAATACTGGCTCAGATGTTAATACTGAGTCCTGGCAGAGTAATGATTTCAAAGATGTACTGACTGGGTCTGATGAGGGTGATGGATCACCTGTTGCTATTATTGATGAAGAGCGCTGTAGGACTGGTTGTGATTCTAAGAAAATATTAGTAGCTTCAAAAGATGCTTCCTCATCATCTGGAAACGAAAATAAAGCAGGCAATTTGCAAGATGCTTCAACTACTTTAGTTGAAAGTTGTGTCAAGTACTCTGAAGCGAATGCATCTGTGTCAGTTTCTGATGATGTTGGAATGAATCTTCTTGCCAGTGTGGCCGCTGGAGAGATCTCCAAATCTGAATTGTTAACACCAGCTGGATCTCCAGAAAGAAATATCACTACTATTGAGCAGTCCTGTGCTAGTGATGCCATAGGCCGGTCTTCTGAAGAAGATCTTGTTCGAGACAAGTCAAATGATAGATTTGATGATGAACGTAAGAAGCAGAGTTCTATATCTGGTGATTTAGTGGCAAATAGTGATGATAATTATTTTGGCTCTTTGATATCTGAAGGGAAGTCTGTAGGAGATCACAATAAGCATATTAATTCATCTATTGTGGAATCACAGCAGGTTACTGAAACTTGTTTAGAAAGCAAAGGAAAATTGAATGAAAAAACTGTTGCTTCTTCATTGGCTGGCATTCCTGAAAGCACTGTACAAGAAGCTAGAGACAGCGACAGTGGCGAACAGCTTAAGGAGAAAAAAATTGTGGAAGTAAGTGCAGATGGAAATCTTGATGTCAAGGTTGGTGATGTTGCAATAGTTGAAATGGAAGCAATTGAAAAATCATCGTCGCATCCCTCTGTAGAAGTTAATGTTAAAAGTGACTATTGTACTACTGAGGGATTAAGCAGTGGTGGACAGACACCCACAAAACCTCCTGTGATTCTTATGCAGTCTGACTCAGTAAAAGGTACAGATGAGAATGTACACCAGCCTACTGGTTTTGGTGTTGATAAGGACCTCAATGATCAGGAATCTGAAAAGAGTGATCATATGGATTCTCACAATCATGCTGGTCAGTCTGAAAATAAAAGAAATGAGAGTGAAAGCGCTGCTGTGACAATGGCTGAAAATAGAGGTTTGGGTTCAGGTGAGGCCAGTCATGCTCTGGAGCATGTGGAGGAGAATTCAGAAACAAAAGAGATTCATGACCAACATGCAGGAGAGGTTCTGCACAAAGCTTCACCTAGCATTCCTTCACAAGAAATGGATCAACGTCTGGGTTCTAAAGGGTTAAAATTAACATCTATGGAATTAGAGGAAGCTGAGGAATGCAGCTCTACCACTGCAGATGCTTCTTCCATGTCTTTTTCTGGTGTGTCAGATAGGGATGCAAAAGTTGAATTTGACTTAAATGAAGGTTTCAATGCAGATGAAGGAAAATGTGGCGAGTTTAATAGCACTACGCCTGGATGTGCACCTTCTGTACAATTGATCAGTCCTGTGCCATTTCCTGCTTCATCCATGGCTAGTGGTATTCCTGTGTCAGTCACTGTGGCTTCTGCTGCAAAGGGGCCCTTTGTGCCACCTGAAGATTTATTGAAAAGCAAAGGGGAACATGGTTGGAAGGGGTCTGCTGCAACTAGTGCATTCCGACCAGCTGAGCCAAGGAAAGTTATGGAAATTCCCCTTATTGCATCAACTACCCTTATTTCTGATACTGCATCTGAAAAGCAGACTCGCCCAGCATTGGATATTGACTTAAATGTGCCTGATGAAAGAATACTTGATGATATTGCCTCTCAAACTTGTGCTCACCATACAGTCTGTGTATCTCTTCCAGCCAATGGGTGTGATCCAGGATGCAATAAAACAATGACTTCACCTGTCCACTGCTCTGGAGGACTCGGTCTTGACTTGAACCAAGTGGATGAGACTTCTGATGTAGGCAATTGCTCCACAAGCAATAGTCATAAAATGGATGTACCACTTCTGCAGGTGAAATCGTCAACTAGTGGGCTGGAGGTGAGTGTCCGTAGGGACTTTGATTTGAATAATGGACCTGCTGCTGATGAAGTCAGCAATGAACCATCATTTTTTACTCAGCATGCCAGGAGCAGTGCGCCATCTCAACCACCTGTTTCTGGACTTCGGATGAGTAATACTGAACTGGGGAACTTCTCATCATGGTTTCCTTCCACTGGAAACACTTATTCAGCTGTCACAATATCTTCTATTATGCCTGATAGAGATCAGCCCTTTTCAGTTGTTGCGCCTAATGGGCCACAAAGGATACTGGGTCCAGCCACTGGGGGCAGCCTATTTGGACCTGATGTGTATAGGGGGCCAGTATTGTCATCATCTCCTGCAGCTCCATATCCATCTGCTCCATTTCAATATCCTGTCTTCCCTTTTCATTCCAGCTTTCCTCTTCCATCAGTATCATTTTCAGGTGGATCTACTACTTATGGAGATTCAATGTCAGGTGGGAGGCTTTGCTTCCCTGCTGTAAATTCACAGTTAATAGGGTCTCCTGGTACAGTTTCATCCCTTTACTCCAGGCCTTGTGTTGTTAGCCTCCCAGATGGTAGCAGTAGCAGTAGTGCTGAGAGTAGTAGGAAATGGGGAAGGCAGGGTTTAGATCTTAATTCTGGGCCTGGAGGACCGGACATAGAAGGGAGAGATGAGAATTCACCTCTCATGCCAAGGCAACTTTCTGTTGTCAGTTCACAATCCCTGGCTGAGGAGCAAGCAAGGATGTTTCAGCTGGCTAGTGGTGTTCTTAAGAGGAAGGAGCCTGATGGTGGGTGGGATAGCTATAAGCAGTCCTCATGGCAATAG 4851 0.4331 MRRLDLQVGLMVRVGFEAGIEAGIGENARLCMGVEDGRKISVGDCALFKPPQDHPAFIGIIRRLTVGKENKLKLGVNWLYRPSEVKLGKGILLEAAPNEIFYSFHKDEIPAASVLHPCKVAFLPKGVELPSGISSFVCRRVYDIANKCVWWLTDHDYINDRQEEVDKLLYRTRIEMHATVQSGGRSPKPMSSPTSMSQLKSGSDSVQNSTSSFPSQVKGRKRERLDQGSEPVKRERTIKIEDGDSGHFRQESIIKAEIARITDKGGLVHTEGVEKLVQLMVPDRSEKKIDLASRSMLAAVIAATDKFDCLSRFVQLRGLPVFDEWLQEVHKGKIGDVSGCRDGDKSVEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRTHKSSEIQKKARGLVDTWKKRVEAEMNINDAKSGSGQTVPWPARPRLPEVSQGGNRHSGGSSDVAMKSSVTQLSASKTASVKIVQGENTTRSASPGSMKSVPSPASATMNLKDGQPRGPACSGASDIPTPNGKDEKSSGSSQSHNNSQSCCSDHAKTGGISGKEDARSSTAMSVNKISGSSSRHRKSINGFPVSAPSGGQRETGSSRNSSLHKNSISEKISQSGLTEKSPDRTSPEGNTSKLIVKIPNRGQSPVQSASACSFDDASIINSASSLVISDKHDQFDRSLKEKGDFCRANTGSDVNTESWQSNDFKDVLTGSDEGDGSPVAIIDEERCRTGCDSKKILVASKDASSSSGNENKAGNLQDASTTLVESCVKYSEANASVSVSDDVGMNLLASVAAGEISKSELLTPAGSPERNITTIEQSCASDAIGRSSEEDLVRDKSNDRFDDERKKQSSISGDLVANSDDNYFGSLISEGKSVGDHNKHINSSIVESQQVTETCLESKGKLNEKTVASSLAGIPESTVQEARDSDSGEQLKEKKIVEVSADGNLDVKVGDVAIVEMEAIEKSSSHPSVEVNVKSDYCTTEGLSSGGQTPTKPPVILMQSDSVKGTDENVHQPTGFGVDKDLNDQESEKSDHMDSHNHAGQSENKRNESESAAVTMAENRGLGSGEASHALEHVEENSETKEIHDQHAGEVLHKASPSIPSQEMDQRLGSKGLKLTSMELEEAEECSSTTADASSMSFSGVSDRDAKVEFDLNEGFNADEGKCGEFNSTTPGCAPSVQLISPVPFPASSMASGIPVSVTVASAAKGPFVPPEDLLKSKGEHGWKGSAATSAFRPAEPRKVMEIPLIASTTLISDTASEKQTRPALDIDLNVPDERILDDIASQTCAHHTVCVSLPANGCDPGCNKTMTSPVHCSGGLGLDLNQVDETSDVGNCSTSNSHKMDVPLLQVKSSTSGLEVSVRRDFDLNNGPAADEVSNEPSFFTQHARSSAPSQPPVSGLRMSNTELGNFSSWFPSTGNTYSAVTISSIMPDRDQPFSVVAPNGPQRILGPATGGSLFGPDVYRGPVLSSSPAAPYPSAPFQYPVFPFHSSFPLPSVSFSGGSTTYGDSMSGGRLCFPAVNSQLIGSPGTVSSLYSRPCVVSLPDGSSSSSAESSRKWGRQGLDLNSGPGGPDIEGRDENSPLMPRQLSVVSSQSLAEEQARMFQLASGVLKRKEPDGGWDSYKQSSWQ 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1262 1616 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 270 407 IPR035441 -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 217 235 - -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 816 839 - -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 993 1043 - -
Glsi13g1262 1616 Gene3D - 34 258 IPR043151 -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 1010 1034 - -
Glsi13g1262 1616 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 308 417 IPR035441 -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 512 536 - -
Glsi13g1262 1616 CDD TFIIS_I 328 404 - -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 1532 1548 - -
Glsi13g1262 1616 ProSiteProfiles TFIIS N-terminal domain profile. 329 406 IPR017923 -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 410 620 - -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 1596 1616 - -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 184 216 - -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 179 235 - -
Glsi13g1262 1616 Pfam BAH domain 39 144 IPR001025 GO:0003682
Glsi13g1262 1616 Pfam TFIIS helical bundle-like domain 354 403 IPR017923 -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 544 620 - -
Glsi13g1262 1616 ProSiteProfiles BAH domain profile. 38 153 IPR001025 GO:0003682
Glsi13g1262 1616 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 34 1616 - -
Glsi13g1262 1616 SMART BAH_4 38 153 IPR001025 GO:0003682
Glsi13g1262 1616 SMART TFS2_5 326 405 IPR003617 GO:0005634
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 1532 1581 - -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 435 491 - -
Glsi13g1262 1616 MobiDBLite consensus disorder prediction 812 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1262 Glsi-ChrGlsi13 30072597 30079568 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Glsi13g1262 BAH 1.4e-11 No_clan