Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi13g1258 | ATGGCGTTCTTGTTGAACAATACAAGGATTGCTTCCCATTTCCGATCGCCATCCCAGAAGACGGAGGATTTGGTTTCTCTCTCGCGCCGCGGATTCCACGTCGAACCCGGGCCTCGTGAAAAAGCCCTCTTGGCAGAGGATGCATTTCTGAAGCCATTCAAATCATATAAGAAGAGTGTGTCACGGCTCAAAAAAATTGGAGATGTTCTAACAGTTGTTGTTGTTGCTGGTTGCTGTTATGAAATATATGTCAAAGCAGTCATGAGAGAAGAAGCTCGGAAAAAGGAAGGGACCGAAAGTAGGAAGGTAGGTAGTGGTTGCGCGGCTTTCATTGGATGGGCCACAGTTGAGTTGGCTTTGAATGAATCGCGAATCGTGCATGCACTTGCACCTTATCTTTCTCACTATTTGGCACAGAATTTAGAAAGAACTGCAACATTTTTTGTCGTTCCGCCCATTTCAATCTTCCAAGTGAGATTTTTGCCTTTTGATTTTGAGATGGCAACTTTTGCAGGTACTACCGAGAAGTGCAAAGCATGTGAAAAGACTGTCTATTTGGTGGATCAGCTTGCTGCTGACAACAAGATTTACCACAAGTTTTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGGGTTTTATACTGTAAGCCTCATTATGATAAACTCTTTAAGATGACTGGGAGCTTGGAAAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGAGTAGTCAGATCTGCTGATCAGGTTCAAACCAATAGCAAGGTTTCATGTTTATTTGCTGGAACTCAGGAAAAGTGTGTTGCTTGCGAGAAAACAGTGTATCCAATTGAGAAGGTGGCTGTTGATGGCAAATCTTACCACAAGCCTTGTTTCAGGTGCTCCCATGGAGGTTGTGTAATCAGCCCATCAAATTATGTGGCCCATGAACATCGTCTTTACTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGCAACTTCAGTAAACTTGATCAGCAGGACAACACTACAACCCAGTAA | 1053 | 0.4359 | MAFLLNNTRIASHFRSPSQKTEDLVSLSRRGFHVEPGPREKALLAEDAFLKPFKSYKKSVSRLKKIGDVLTVVVVAGCCYEIYVKAVMREEARKKEGTESRKVGSGCAAFIGWATVELALNESRIVHALAPYLSHYLAQNLERTATFFVVPPISIFQVRFLPFDFEMATFAGTTEKCKACEKTVYLVDQLAADNKIYHKFCFRCHHCKGTLKLSNYCSFEGVLYCKPHYDKLFKMTGSLEKSFEGIPRTARVVRSADQVQTNSKVSCLFAGTQEKCVACEKTVYPIEKVAVDGKSYHKPCFRCSHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSKLDQQDNTTTQ | 350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi13g1258 | 350 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 269 | 301 | - | - | |
| Glsi13g1258 | 350 | CDD | LIM2_SF3 | 276 | 336 | - | - | |
| Glsi13g1258 | 350 | Pfam | LIM domain | 276 | 331 | IPR001781 | - | |
| Glsi13g1258 | 350 | Pfam | LIM domain | 177 | 231 | IPR001781 | - | |
| Glsi13g1258 | 350 | Gene3D | Cysteine Rich Protein | 270 | 340 | - | - | |
| Glsi13g1258 | 350 | Gene3D | Cysteine Rich Protein | 171 | 241 | - | - | |
| Glsi13g1258 | 350 | SMART | lim_4 | 275 | 327 | IPR001781 | - | |
| Glsi13g1258 | 350 | SMART | lim_4 | 176 | 228 | IPR001781 | - | |
| Glsi13g1258 | 350 | CDD | LIM1_SF3 | 173 | 234 | - | - | |
| Glsi13g1258 | 350 | ProSitePatterns | LIM zinc-binding domain signature. | 177 | 211 | IPR001781 | - | |
| Glsi13g1258 | 350 | ProSiteProfiles | LIM domain profile. | 274 | 334 | IPR001781 | - | |
| Glsi13g1258 | 350 | PANTHER | OS06G0237300 PROTEIN | 82 | 260 | - | - | |
| Glsi13g1258 | 350 | FunFam | LIM domain and actin-binding 1 | 270 | 340 | - | - | |
| Glsi13g1258 | 350 | ProSiteProfiles | LIM domain profile. | 175 | 235 | IPR001781 | - | |
| Glsi13g1258 | 350 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 169 | 202 | - | - | |
| Glsi13g1258 | 350 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 302 | 341 | - | - | |
| Glsi13g1258 | 350 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 203 | 243 | - | - | |
| Glsi13g1258 | 350 | FunFam | LIM domain and actin-binding 1 | 171 | 241 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi13g1258 | Glsi-ChrGlsi13 | 30044217 | 30050463 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Glsi13g1258 | LIM | 1.9e-10 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Glsi02g0736 | 02 | 4795824 | 4797602 | Glsi13g1258 | 13 | 30044217 | 30050463 | CCT | |
| Glsi13g1258 | 13 | 30044217 | 30050463 | Glsi13g1258 | 13 | 30044217 | 30050463 | ECH |