Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1255 ATGGGTGGCAATGGCAAGCACAGGTGGAGAATCTCTTTCACTCGTCCTTCCTCAAGCTCCAAGCACGAACCGAAGCAGCCTCCCGAGGAGCTTATATGCCCAATTTCTGGTTGTTTAATGTCGGACCCTGTGGTTGTCGCTTCTGGTCAGACCTTTGAACGGGTTGCTGTTCGAGTCTGCAGAGATTTGGAGTTCTCCCCCAAGCTAGAAGACGGGTCCACTCCCGATTTCTCCACCATCATTCCCAATTTGGCCATCAAAACCACGATCTCCAATTGGTGCAATAAATCGGGGGCCGAAACCCCGCGCGCACCGGATTATAGCTCCGTGGAGAGGCTTGTCCGTGCAGCAATGGCGTCCCGGCAAGAAACACAGGAGCCTGATTTAAGATTTTCGGATAGAGAATTGCTTGAGGCCGTGGCGGATAATCCACCGGTGATTTTCTCTCACGCTGCGACTGAGTTGGGTCCCCGGGTCAACCCCTTCAACTCCACTTCATCCGAGGAATCGGTAATCATCGCAGCTAGTCCCGAGACCCCTTTGCCCCTGACGACTCGTCCTACCTGCTACTCCTCGTCGTCGTCTTCCGAAATCAGCGACGGCGTAGTTCAAAACCCTACTGGCCCAATTTCCGAAGAAGAGGAGAAACTAATAGCAAAGCTGAGGAGCACCGAAGTTTCTGAGCAAGAAGAAGCCCTTATTTCACTGAGAAATATCACGAGGACCATAGAAGAAACCAGGATTTCTCTCTGCACGCGTCCGTTGCTCTCGGCACTCCGATCGTTGATCCTCTCGAGGAACTCTGTTGTGCAAGTAAACGCCGTCGCTTCGTTGGTCAACTTCTCCCTGGCTAAATCGAATAAGGTGAAAATCGTAAGGTCGGGATTTATCCCTTTTCTCGTCGACGTCTTGAAAGGGGGATTCGCTGAGTCGCAGGAACACGCCGCGGGCGCACTATTCAGCTTGGCCTTAAACGACGACAACAAAATGGCTATTGGAGTTCTGGGCGCATTGCAGCCACTGATGCACGCATTGAGGTCGGAGTCGGAACGGACTCGGCACGACTCGGCGCTGGCGTTGTACCACCTGACCTTAGTTCAAAGCAACCGGGTGAAGCTGGTGAAATTCGGCGTGGTGCCTACTCTGGTATCAATGGTGAAATCAAGGGATTCAGTGGGTCGGGTTTTGCTAATTCTGTGTAATCTTGCGGCGTGTACAGAGGGGCGGACAGCGATGCTGGACGCGAATGCGGTGGAGTGCTTGGTGGGTGTGCTGAGGGGGAAGGAGCCGGACTCGGAAACGACGCGGGAGAACTGTGTGGCAGCGTTATATGCAATGAGCCATGGGAGCTTGAGGTTTAAAGGGTTGGCAAAGGAAGCGAGGGCAGTGGAGGTGTTAAAGGAGGTTGAAGAGAGAGGAACAGAGAGGGCACGAGAGAAGGCCAAGAGGATATTGCAGACGATGAGGGCAGGAGAAGGGGATGACGAAAACGGTTCGGATTTTGACGGGGTGTTGGAATCGGGCGGGTTGGCTCGAAATCGGTTCCGAGTGGGTGGTGGAAGGAATATAAACGCTGCCAACACAACTACATTTTAA 1596 0.5326 MGGNGKHRWRISFTRPSSSSKHEPKQPPEELICPISGCLMSDPVVVASGQTFERVAVRVCRDLEFSPKLEDGSTPDFSTIIPNLAIKTTISNWCNKSGAETPRAPDYSSVERLVRAAMASRQETQEPDLRFSDRELLEAVADNPPVIFSHAATELGPRVNPFNSTSSEESVIIAASPETPLPLTTRPTCYSSSSSSEISDGVVQNPTGPISEEEEKLIAKLRSTEVSEQEEALISLRNITRTIEETRISLCTRPLLSALRSLILSRNSVVQVNAVASLVNFSLAKSNKVKIVRSGFIPFLVDVLKGGFAESQEHAAGALFSLALNDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKFGVVPTLVSMVKSRDSVGRVLLILCNLAACTEGRTAMLDANAVECLVGVLRGKEPDSETTRENCVAALYAMSHGSLRFKGLAKEARAVEVLKEVEERGTERAREKAKRILQTMRAGEGDDENGSDFDGVLESGGLARNRFRVGGGRNINAANTTTF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1255 531 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Glsi13g1255 531 PANTHER U BOX DOMAIN-CONTAINING 27 488 - -
Glsi13g1255 531 Pfam U-box domain 28 96 IPR003613 GO:0004842|GO:0016567
Glsi13g1255 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 100 IPR013083 -
Glsi13g1255 531 SMART arm_5 405 448 IPR000225 GO:0005515
Glsi13g1255 531 SMART arm_5 284 324 IPR000225 GO:0005515
Glsi13g1255 531 SMART arm_5 325 365 IPR000225 GO:0005515
Glsi13g1255 531 SMART arm_5 366 404 IPR000225 GO:0005515
Glsi13g1255 531 SUPERFAMILY ARM repeat 216 488 IPR016024 -
Glsi13g1255 531 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Glsi13g1255 531 Gene3D - 211 487 IPR011989 -
Glsi13g1255 531 FunFam RING-type E3 ubiquitin transferase 9 101 - -
Glsi13g1255 531 SUPERFAMILY RING/U-box 17 101 - -
Glsi13g1255 531 MobiDBLite consensus disorder prediction 183 206 - -
Glsi13g1255 531 Pfam Armadillo/beta-catenin-like repeat 325 364 IPR000225 GO:0005515
Glsi13g1255 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 295 332 IPR000225 GO:0005515
Glsi13g1255 531 MobiDBLite consensus disorder prediction 1 28 - -
Glsi13g1255 531 MobiDBLite consensus disorder prediction 183 209 - -
Glsi13g1255 531 FunFam RING-type E3 ubiquitin transferase 212 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1255 Glsi-ChrGlsi13 30022634 30024229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1255 1 531 U-box Gene Family AT5G65200 57.829 0.0 578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1255 13 30022634 30024229 Glsi13g1255 13 30022634 30024229 ECH