Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1235 ATGGCTGTCGCCGGCGATGTTTTCAGGCAGACTTTGTCGGAAGTGCTTGAGGAATCGCCTTCGGGTGATGGGGAACTGCATGTTCTTGCCGTTGATGACAGTCATGTCGATCGCAAGGTCATTGAACGGTTGTTAAAAATTTCTTCTTGCAAAGTGACGGTGGTAGAGAGTGGAACCCGAGCTCTGCAATATCTGGGATTGGATGGAGAGAAGAGCGCCATTGGGCTTGACAATGTAAAGGTTAATTTAATTATGACGGACTATTCCATGCCGGGGATGACAGGATACGAACTACTCAAGAAGATCAAGGAATCATCTATATTTAGAGAGATTCCAGTGGTGATCATGTCATCTGAGAATATCATGACTCGAATTGATAGATGCTTGGAGGAAGGAGCAGAGGGTTTTCTGTTGAAGCCAGTAAAGTTGTCAGATGTGAAGCGCTTGAAAGATTTCATAATGAGGGGTGAGGGGAAGGAAAGAGGAGAGAAATCATGTCACAAGAGAAAGCGATCAGATGATTATACTCTATTTGCAACAACTCCATTCTCACCCATCTGTCATACTTGTGATTGCCCATCATTTTCACCATCTGCCTTGTCCTCAAAGAAATCTAGAACGCTACCAGAGATTGAATAG 639 0.4413 MAVAGDVFRQTLSEVLEESPSGDGELHVLAVDDSHVDRKVIERLLKISSCKVTVVESGTRALQYLGLDGEKSAIGLDNVKVNLIMTDYSMPGMTGYELLKKIKESSIFREIPVVIMSSENIMTRIDRCLEEGAEGFLLKPVKLSDVKRLKDFIMRGEGKERGEKSCHKRKRSDDYTLFATTPFSPICHTCDCPSFSPSALSSKKSRTLPEIE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1235 212 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 169 IPR045279 GO:0009736
Glsi13g1235 212 Pfam Response regulator receiver domain 28 146 IPR001789 GO:0000160
Glsi13g1235 212 SUPERFAMILY CheY-like 26 153 IPR011006 -
Glsi13g1235 212 CDD REC_typeA_ARR 28 149 - -
Glsi13g1235 212 ProSiteProfiles Response regulatory domain profile. 27 154 IPR001789 GO:0000160
Glsi13g1235 212 Gene3D - 26 180 - -
Glsi13g1235 212 SMART REC_2 26 150 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1235 Glsi-ChrGlsi13 29737018 29738987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1235 26 170 Response Regulator Gene Family AT3G48100 77.551 6.38e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi13g1235 Response_reg 9.2e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1235 13 29737018 29738987 Glsi13g1235 13 29737018 29738987 ECH