Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1225 ATGTCTGGCTCGTGCGCCGCCGCCGAATCCATCATTTCCCGTGAGGGTGATGGCTCCGCTACCGGCGCCGGCGAGTTCATGCTGTTTGGGGTTAGAGTCGTTGTTGATTCGATGAGAAAGAGCGTTAGTATGAATAATCTCTCACAGTACGAGCATCCTCAGGACGCCTCAAACAACATTAACAACAAGGAAGATGCGCTGGCAGTCGGTTATGCCTCCGCCGATGAAGCTGCTGCTCACAATTCCGGCAAACATCGTGAGCGTGAACGTGAGCGTAAGCGAGGGGTTCCATGGACGGAGGAAGAGCACAAGCTGTTCTTGCTGGGATTGCAGAAAGTTGGGAAAGGTGATTGGAGAGGGATCTCAAGGAACTACGTGAAAACTCGGACGCCAACACAGGTTGCGAGTCATGCTCAGAAGTACTTTCTTCGGCGAAGCAACCTTAATCGCAGACGCCGTAGATCTAGCCTTTTTGACATCACCACTGACACGGTCTCTTCAATGCCAATGGAAGAAGAACAGATCCAGCATCAAGATTATGCGTCTCATTCAAATCCTGTGTTCCCTGCAACCCCTGAAACTAGCGACATGAATGGATTTTCAATGACGCCAGTATATTCCATGGGTGTTACTCCTGGAGTTATTTCAGTCCCAGCTGGGAATCCAATGGAAAAACTCACTCTGGGACAAGGAATTGTGGAGCACAATGGATCACCCCAGCTAGTCCGTTCAATTCCTGTTCCAGATCCTAAAGCTTCTATAGCATCTAATATCACCTCGAGTTCGAGTTTAACTGTTGATCCACCAACATTGTCTCTCGGGCTATCCTTGTCATCTGATCAAAGACAAACATCATCAAAGCTTTCATCTTTACATGCAATGCCGCGTTTCAACAATGGAGATAGCATCATAAGTGTTGCTTGA 924 0.4827 MSGSCAAAESIISREGDGSATGAGEFMLFGVRVVVDSMRKSVSMNNLSQYEHPQDASNNINNKEDALAVGYASADEAAAHNSGKHRERERERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSSMPMEEEQIQHQDYASHSNPVFPATPETSDMNGFSMTPVYSMGVTPGVISVPAGNPMEKLTLGQGIVEHNGSPQLVRSIPVPDPKASIASNITSSSSLTVDPPTLSLGLSLSSDQRQTSSKLSSLHAMPRFNNGDSIISVA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1225 307 CDD SANT 97 142 IPR001005 -
Glsi13g1225 307 Gene3D - 96 148 - -
Glsi13g1225 307 MobiDBLite consensus disorder prediction 75 95 - -
Glsi13g1225 307 FunFam transcription factor MYB1R1 96 147 - -
Glsi13g1225 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 146 IPR017930 -
Glsi13g1225 307 ProSiteProfiles SANT domain profile. 93 146 IPR017884 -
Glsi13g1225 307 PANTHER TRANSCRIPTION FACTOR KUA1 23 233 - -
Glsi13g1225 307 ProSiteProfiles Myb-like domain profile. 90 142 IPR001005 -
Glsi13g1225 307 MobiDBLite consensus disorder prediction 79 95 - -
Glsi13g1225 307 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
Glsi13g1225 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 93 144 IPR006447 GO:0003677
Glsi13g1225 307 SUPERFAMILY Homeodomain-like 92 147 IPR009057 -
Glsi13g1225 307 SMART sant 94 144 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1225 Glsi-ChrGlsi13 29686209 29687890 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi13g1225 Myb_DNA-binding 1.7e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0767 02 4978122 4979680 Glsi13g1225 13 29686209 29687890 CCT
Glsi13g1225 13 29686209 29687890 Glsi13g1225 13 29686209 29687890 ECH