Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1222 ATGGTGTCCACCTTCACCTCTCAGAAGAAAAGCCTTCACTCCCACCTGGCTGCCAACCTTAGTAAGCTCACCATACCGTCTTCCTCCACCAGCCACCAAGATTTGGACTTTTCCCAGGTCTTTTCCCCTCTGTCTCCCCAGGAACCCAATTCATCTCCATCCACTGTCATTGTTGGGAGCCCACAAGTTATTCAGAGTAGATCCCACTCCTTTGTGGGTCCCTCCCCACTCTTCGCCCAGCCCTCTAACTCCCTCTCCTTTCTTGATGAAATCGATTCTCAAAGCGAAGGCGAGACTGAAACCGATATTGGAAATGGGTTAGGAACTGATGGTGCAGTTGATGAAAAGCAAGTGTGTGTGACTAACCCTGAGGAGAAAGTAGCCGACAAAATTGGACCTGGGGATTTTCAGATTTTGAGAGTTGTGGGGCAGGGCGCGTTCGGGAAGGTCTTTCTTGTGAGGAAAAAGAGTGACCTTTTGAATGGAGAGGGCGGTGGTGATGGTGACGGGATTTTTGCAATGAAGGTCATGAGGAAGGAGACGATCATAAAAAAGAATCATGTGGATTATATGAAAGCTGAGAGAGATATTCTCACCAAAGTGGTGCATCCTTTTATTGTTCAACTTCGGTACTCTTTTCAGACCAAGTCTAAATTATATTTGATCTTGGACTTTATAAATGGAGGACATCTCTTCTTTCATCTGTATCGGCAGGGTATCTTCAGTGAGGATCAGGCAAGGATTTACGCTGCTGAGATGGTATCTGCTGTTTCACATCTTCACAAGAGTGGAATCGTGCATCGGGATCTTAAACCTGAAAATATACTTATGGGTGCTGATGGGCATGTAATGCTGACTGACTTTGGACTGGCAAAGGAAATTGATGAGTCGGGCAGATCCAACTCTATGTGTGGAACCACAGAATATATGGCGCCAGAAATCTTACTGGCTAAAGGCCACAACAAGGACACAGATTGGTGGAGTGTTGGTATATTGTTGTATGAAATGCTAACAGGGAAGCCACCATTTACACATGCTAACAGAAAAAAACTTCAAGAGAAAATTGTTAAAGAGAAGGTGAAACTTCCGCCATTCCTTACCAGTGAAGCTCACTCTTTGCTTAAAGGATTGCTGCAAAAGGAACCATCAAGAAGGTTAGGCAGGGGGCCAAATGGAGACGACCAGATCAAAAGTCATAACTGGTTTCGTTCAATCAATTGGAAGAAACTGGAGGCAAGAGAACTGCAGCCGAAGTTCAAACCGGATGTGACTGGAATAGACTGTACAGCTAATTTTGATCAATGCTGGACAGCAATGCCTGCTGATGACTCACCAGCACCCACTCCTACAGAAGCTAACCATTTTCAGGGCTATTCTTACGTGGCACCAAACCCTTGGCTTTCGTCTGGCTAG 1413 0.4551 MVSTFTSQKKSLHSHLAANLSKLTIPSSSTSHQDLDFSQVFSPLSPQEPNSSPSTVIVGSPQVIQSRSHSFVGPSPLFAQPSNSLSFLDEIDSQSEGETETDIGNGLGTDGAVDEKQVCVTNPEEKVADKIGPGDFQILRVVGQGAFGKVFLVRKKSDLLNGEGGGDGDGIFAMKVMRKETIIKKNHVDYMKAERDILTKVVHPFIVQLRYSFQTKSKLYLILDFINGGHLFFHLYRQGIFSEDQARIYAAEMVSAVSHLHKSGIVHRDLKPENILMGADGHVMLTDFGLAKEIDESGRSNSMCGTTEYMAPEILLAKGHNKDTDWWSVGILLYEMLTGKPPFTHANRKKLQEKIVKEKVKLPPFLTSEAHSLLKGLLQKEPSRRLGRGPNGDDQIKSHNWFRSINWKKLEARELQPKFKPDVTGIDCTANFDQCWTAMPADDSPAPTPTEANHFQGYSYVAPNPWLSSG 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1222 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Glsi13g1222 470 FunFam Non-specific serine/threonine protein kinase 226 421 - -
Glsi13g1222 470 FunFam Non-specific serine/threonine protein kinase 134 252 - -
Glsi13g1222 470 ProSiteProfiles Protein kinase domain profile. 136 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1222 470 ProSitePatterns Protein kinases ATP-binding region signature. 142 175 IPR017441 GO:0005524
Glsi13g1222 470 SUPERFAMILY Protein kinase-like (PK-like) 134 463 IPR011009 -
Glsi13g1222 470 Gene3D Transferase(Phosphotransferase) domain 1 226 421 - -
Glsi13g1222 470 Pfam Protein kinase domain 136 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1222 470 ProSiteProfiles AGC-kinase C-terminal domain profile. 403 470 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi13g1222 470 Gene3D Phosphorylase Kinase; domain 1 135 445 - -
Glsi13g1222 470 Pfam Protein kinase C terminal domain 423 460 IPR017892 GO:0004674|GO:0005524|GO:0006468
Glsi13g1222 470 SMART serkin_6 136 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1222 470 SMART pkinase_C_6 403 462 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi13g1222 470 PANTHER RIBOSOMAL PROTEIN S6 KINASE 55 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1222 Glsi-ChrGlsi13 29677688 29680686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1222 34 463 AGC Kinase Gene Family AT3G08720 60.000 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Glsi13g1222 Pkinase 4.4e-69 CL0016