Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1213 ATGGATCCTCCCCTCATCAACGAGTCTACATTCTCTCCCGCTAATCCATCTGCCTATAGTTTGGCTGAGATTTGGCCCTTTAGTGCAGAACCCGGTGCCGGAGGATTGGGCCTCCGAATGGGTCATTTAGGTCAGAATTTCGGCGGTTTTGCTGAAAATTCCTTGCATCGAGATGGGTCTGCTGAAGAGTCGACGGTCACGGAGCAGAGTGGCGGTGGGGGAGGAGGTGCTGCCGCTAGTGCCTGTGGAAATCAAAGGAAGAGGAAGGATGCCAGCTCTGAGGACGAGTCGTCAAAGATGGTTTCGATGAGTAGTGCCAATGACTTGAATGATTCTGGCAATAAACGGATAAAATCAGGAGGATCCAGTAATGAAAATGGTGGTTTGAAGCCTGAAGTAGAAGCAAGTTCAGCAGCTGGTAGCAAGTCAGGTGAACAAAGCACTAAACCCTCTGAGCCACCTAAGCAAGACTATATACATGTGAGAGCAAGAAGAGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCAAGAAGGGAAAAGATCAGTGAGAGAATGAAAATTCTTCAAGATTTAGTCCCTGGATGTAACAAGGTAATTGGTAAAGCCCTTGTCCTGGATGAGATAATCAATTATATTCAGTCACTGCAGCGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGTAGTTAATTCAAGAATGAACACGAACCCGACTATTGAAGGGTTCCCTTCAAAAGATCTTGGTGCTCAGCCATTTGACGTTGCCGGAATGATATTTGGTTCAGAAGCAGCCAGGACGTATGCTCAGGGAACACAACCTGGATGGCATATGAAGATAGGTGGTGGTTTCGAGAGAGCAACATAG 870 0.4678 MDPPLINESTFSPANPSAYSLAEIWPFSAEPGAGGLGLRMGHLGQNFGGFAENSLHRDGSAEESTVTEQSGGGGGGAAASACGNQRKRKDASSEDESSKMVSMSSANDLNDSGNKRIKSGGSSNENGGLKPEVEASSAAGSKSGEQSTKPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSRMNTNPTIEGFPSKDLGAQPFDVAGMIFGSEAARTYAQGTQPGWHMKIGGGFERAT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1213 289 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Glsi13g1213 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 236 IPR036638 GO:0046983
Glsi13g1213 289 Coils Coil 214 234 - -
Glsi13g1213 289 CDD bHLH_AtBPE_like 157 240 - -
Glsi13g1213 289 MobiDBLite consensus disorder prediction 30 157 - -
Glsi13g1213 289 MobiDBLite consensus disorder prediction 139 153 - -
Glsi13g1213 289 FunFam Basic helix-loop-helix transcription factor 164 237 - -
Glsi13g1213 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 217 IPR011598 GO:0046983
Glsi13g1213 289 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 66 260 IPR024097 GO:0006355
Glsi13g1213 289 Gene3D - 164 241 IPR036638 GO:0046983
Glsi13g1213 289 SMART finulus 173 223 IPR011598 GO:0046983
Glsi13g1213 289 MobiDBLite consensus disorder prediction 97 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1213 Glsi-ChrGlsi13 29580019 29582716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1213 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 57.288 1.08e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi13g1213 HLH 2.4e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1213 13 29580019 29582716 Glsi13g1213 13 29580019 29582716 ECH