Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1210 ATGGTCGGGCCTGCTTGTTGCGAGAAGCTGAGTCTTAAAAGGGGTGTCTGGACTGCAGAAGAAGATGCCAAGATACTCGCATTTGTCTCAAAGCATGGATCTGGTAACTGGACTTCTGTTCCCAAAAAAGCAGGTTTAAAAAGGTGTGGTAAAAGTTGCAGGCTTAGGTGGACCAACTACCTCAGGCCTGATCTTAAGCATGATAGCTTCACACCCCAGGAGGAGGATTTAATTGTTAGGCTTCACTCAGCCATAGGTAGCAGGTGGTCTATAATAGCTCAACAACTTCCTGGGAGAACAGACAACGATGTAAAGAACTACTGGAACACAAAGCTGAAAAAGAAGCTGTCTGAAATGGGAATAGACCCTGTCACCCATAAGCCCTTCTCCAAACTCCTTGCTGACTATGGCTACATTGGCGGTCTCCAGAAACCAAGTACTAGAATTGGGTCTCTCAGTAAAGACTTCAAGAATGCGGTTCTGCTAAAATCAGAGCCATTTCCAACCCCTCCACAAGGAATCAGAAGCATCCATAGCCATCCAAAGCAACTATCAACATCACAAAAAATGGAACCAACTGAGGATAGCTTTCTGTGTAACAGAAGTCGCGTCCAGTTCCAAGCCATACCAAAGGTGTCAGGAGCTTCAAATTTCATAAACATGACGGAGAAGGAGACAATCCCAGTAGCTATATTTGGGGAAGGCTTAAGCTTCTTGTCATCAACTTCATCACCATCTACTTCTTCTACTTGTTCCACTGCAGCTCAGGTACCCTTCAGTTGGAACGACTTTCTTCTCGAAGATGTTTTGTTTTCACCGGCTGCTGATAACCAAGAACAGGAAAGCATAGCTGGGTTCTTGTCGAAGGATTTTGTGAGCCACAAAGACGATGTGACTATGACTGAGAATATGAAAGAGGTCGGGTCAGAGTCACAGCAAGTCCCGATCAGCAGTGACTTCCAGTTTTCATCATCCTCCGACATTTCCTTCGTCGAAGACATGCTTGATAGAGAAAATGAGATATTTTGTCGTGGAAAAACTGTAGAACGATACAATTCCAATTGTGGGTTGTTTGGGGACGAAGAAAACTCGGTGAAGATGGTGGCCATTTCGCTTTACAGAGGGAATCTCCACAGAGTCCCAGACGTACCTCGTCGATGGCTAATGCCAACTGCGAAAATTTCTTCCAAGGACTTCAAATCGCTTCTAGCGCGTCGCTCCAAGGCCCTCTCTCGCCTTCGTGCAGCCACGGCTACCACCACCTCCTCGAACCCTAACCCTAGCTCGCTCTCTAACGGCCAAAATGAGGTTCCTACAATTGATAAGCTATCTCTTGGGATTCAGTCCGAACCAGTCAAGGTCAATAATAATGGAGAAGGGCATTCGCGGGAGGGAGAAGATAATAAAGAATCGGAACTCGTTAATAATTCCATGAAGAAGCCAGTTGATGGGTCTGATTCATTTATCGATTCTAAGACTGATGTTTCAGAGAAAGCGTCTGAACCTGTCGATCGCGGCGCCACTTCAATGGAAAAACAAACTGAGACGATCAGAGACAAAGGAGATATGTTAAATGACAAAGAGAAAAGGAAAAGGGAAGTTGAGGATAAGTTACAAGTTTTGACTGCGAAGAAACATAATCTTGTATTGGTGTTGAAGCAGATCTTGAATACAGAGGAAGAATTAAAAAGACGAAATAGTATGCAAGGGATTGCTTTGCGCCCTTCTGTTCCACTTCAAGCAGATGGGACAAATGATACTGGTTCAATGACTAGGCATATGACTCAAAGGATGGGCTCAGAAGCAAATCTTGGTGGTGATATGGAAGGGAGTGAAACTGATGATATTTCAAACCATAACATGCATTCTCGTTATGTGCTTCGGACGAGTAGCATGTCACCTTCTTCAGAGTCCCCTCTCAGGAGGACCCCTGGTGTTCAGCAGAACATGGTTTCACACCCTTCTCGAGCAAGTTTAGGAGCCACTGTTAGTCCGTCACGCTTTGCTCTTGCACATCAAGGCAATCCCATGAATCCGCCTTCAGTATCTCTGTCAGGAACAAGCTACATTGCGTCATCCCCTTCACCAGCAGCATCCGGTGGCACTTCTGTTTTCAGAGATGCTCGGCAGCCAAGTCCGTGGAACTAG 2148 0.4558 MVGPACCEKLSLKRGVWTAEEDAKILAFVSKHGSGNWTSVPKKAGLKRCGKSCRLRWTNYLRPDLKHDSFTPQEEDLIVRLHSAIGSRWSIIAQQLPGRTDNDVKNYWNTKLKKKLSEMGIDPVTHKPFSKLLADYGYIGGLQKPSTRIGSLSKDFKNAVLLKSEPFPTPPQGIRSIHSHPKQLSTSQKMEPTEDSFLCNRSRVQFQAIPKVSGASNFINMTEKETIPVAIFGEGLSFLSSTSSPSTSSTCSTAAQVPFSWNDFLLEDVLFSPAADNQEQESIAGFLSKDFVSHKDDVTMTENMKEVGSESQQVPISSDFQFSSSSDISFVEDMLDRENEIFCRGKTVERYNSNCGLFGDEENSVKMVAISLYRGNLHRVPDVPRRWLMPTAKISSKDFKSLLARRSKALSRLRAATATTTSSNPNPSSLSNGQNEVPTIDKLSLGIQSEPVKVNNNGEGHSREGEDNKESELVNNSMKKPVDGSDSFIDSKTDVSEKASEPVDRGATSMEKQTETIRDKGDMLNDKEKRKREVEDKLQVLTAKKHNLVLVLKQILNTEEELKRRNSMQGIALRPSVPLQADGTNDTGSMTRHMTQRMGSEANLGGDMEGSETDDISNHNMHSRYVLRTSSMSPSSESPLRRTPGVQQNMVSHPSRASLGATVSPSRFALAHQGNPMNPPSVSLSGTSYIASSPSPAASGGTSVFRDARQPSPWN 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1210 715 CDD SANT 69 112 IPR001005 -
Glsi13g1210 715 MobiDBLite consensus disorder prediction 170 189 - -
Glsi13g1210 715 Gene3D - 7 67 - -
Glsi13g1210 715 FunFam MYB-related transcription factor 13 66 - -
Glsi13g1210 715 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi13g1210 715 MobiDBLite consensus disorder prediction 485 505 - -
Glsi13g1210 715 MobiDBLite consensus disorder prediction 413 442 - -
Glsi13g1210 715 MobiDBLite consensus disorder prediction 413 531 - -
Glsi13g1210 715 FunFam transcription factor MYB80 69 129 - -
Glsi13g1210 715 CDD SANT 17 61 IPR001005 -
Glsi13g1210 715 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi13g1210 715 Coils Coil 517 544 - -
Glsi13g1210 715 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Glsi13g1210 715 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi13g1210 715 Gene3D - 68 128 - -
Glsi13g1210 715 MobiDBLite consensus disorder prediction 670 715 - -
Glsi13g1210 715 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi13g1210 715 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi13g1210 715 MobiDBLite consensus disorder prediction 457 476 - -
Glsi13g1210 715 PANTHER TRNA (ILE)-LYSIDINE SYNTHASE 367 715 - -
Glsi13g1210 715 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi13g1210 715 MobiDBLite consensus disorder prediction 511 531 - -
Glsi13g1210 715 SMART sant 13 63 IPR001005 -
Glsi13g1210 715 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1210 Glsi-ChrGlsi13 29565306 29569389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1210 1 342 MYB Transcription Factor Family AT3G28470 41.525 1.65e-68 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1210 Myb_DNA-binding 5.8e-15 CL0123